Variant report
Variant | rs58857981 |
---|---|
Chromosome Location | chr19:42361281-42361282 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:4 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr19:42351673..42358248-chr19:42360570..42366998,12 | K562 | blood: | |
2 | chr19:42361051..42365836-chr19:42460461..42465209,10 | K562 | blood: | |
3 | chr19:42356986..42361396-chr19:42362042..42367037,5 | MCF-7 | breast: | |
4 | chr19:42361079..42367934-chr19:42431466..42436133,8 | K562 | blood: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000105372 | Chromatin interaction |
ENSG00000142025 | Chromatin interaction |
ENSG00000076928 | Chromatin interaction |
ENSG00000105404 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10404939 | 0.82[ASN][1000 genomes] |
rs10405900 | 0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs10414356 | 0.83[ASN][1000 genomes] |
rs10415452 | 0.85[AMR][1000 genomes];0.87[ASN][1000 genomes] |
rs10417985 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs10500284 | 0.84[ASN][1000 genomes] |
rs12461099 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs12461131 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs12976571 | 0.82[ASN][1000 genomes] |
rs12984383 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs1366610 | 0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs1428922 | 0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs1457144 | 0.82[ASN][1000 genomes] |
rs1870093 | 0.81[ASN][1000 genomes] |
rs2075749 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2075750 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs2075752 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs2075754 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs2290695 | 0.82[ASN][1000 genomes] |
rs2305809 | 0.84[ASN][1000 genomes] |
rs3786536 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs3786538 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs3810153 | 0.81[AMR][1000 genomes];0.86[ASN][1000 genomes] |
rs3922888 | 0.83[ASN][1000 genomes] |
rs4130852 | 0.83[ASN][1000 genomes] |
rs4803511 | 0.83[ASN][1000 genomes] |
rs4803512 | 0.87[AFR][1000 genomes];0.83[ASN][1000 genomes] |
rs6509001 | 0.84[ASN][1000 genomes] |
rs6509002 | 0.81[ASN][1000 genomes] |
rs7248641 | 0.82[ASN][1000 genomes] |
rs7250787 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs7254214 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs7257666 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs7258163 | 0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7259596 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs7259967 | 0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs73549152 | 0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs8102670 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs8104958 | 0.82[ASN][1000 genomes] |
rs8113780 | 0.82[ASN][1000 genomes] |
rs873282 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs882520 | 0.82[AMR][1000 genomes];0.86[ASN][1000 genomes] |
rs891167 | 0.84[AMR][1000 genomes] |
rs930102 | 0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv522854 | chr19:42120283-42931004 | Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 104 gene(s) | inside rSNPs | diseases |
2 | nsv1061878 | chr19:42325490-42416056 | Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
3 | nsv911776 | chr19:42343526-42416056 | Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
4 | nsv911777 | chr19:42357455-42521108 | Bivalent/Poised TSS Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 34 gene(s) | inside rSNPs | diseases |
5 | nsv520239 | chr19:42357455-42931004 | Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 92 gene(s) | inside rSNPs | diseases |
6 | nsv911778 | chr19:42358362-42416056 | Strong transcription Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 28 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr19:42352000-42363800 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
2 | chr19:42358400-42363200 | Weak transcription | Primary hematopoietic stem cells short term culture | blood |