Variant report

Variant	rs58860639
Chromosome Location	chr12:8822245-8822246
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12299640	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12306337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12314360	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12385824	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12822141	1.00[ASN][1000 genomes]
rs12824174	1.00[ASN][1000 genomes]
rs2377491	1.00[ASN][1000 genomes]
rs28372697	0.82[ASN][1000 genomes]
rs57541397	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58333563	0.90[ASN][1000 genomes]
rs58503001	0.90[ASN][1000 genomes]
rs58544193	0.90[ASN][1000 genomes]
rs59480189	0.83[AMR][1000 genomes]
rs7132012	0.90[ASN][1000 genomes]
rs71447528	1.00[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8811800-8829600	Weak transcription	Thymus	Thymus
2	chr12:8814400-8823400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:8821400-8824600	Weak transcription	Adipose Nuclei	Adipose
4	chr12:8821600-8845000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr12:8822000-8823200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr12:8822000-8823200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr12:8822000-8823400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr12:8822200-8823000	Weak transcription	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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