Variant report
| Variant | rs2377491 |
|---|---|
| Chromosome Location | chr12:8824919-8824920 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:68)
| rs_ID | r2[population] |
|---|---|
| rs10128818 | 1.00[JPT][hapmap] |
| rs10505736 | 1.00[JPT][hapmap] |
| rs11046858 | 1.00[JPT][hapmap] |
| rs11046887 | 1.00[JPT][hapmap] |
| rs11046900 | 1.00[JPT][hapmap] |
| rs11047042 | 1.00[JPT][hapmap] |
| rs11612882 | 1.00[JPT][hapmap] |
| rs11616092 | 1.00[JPT][hapmap] |
| rs12297411 | 1.00[JPT][hapmap] |
| rs12299640 | 1.00[ASN][1000 genomes] |
| rs12302099 | 1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs12303273 | 1.00[JPT][hapmap] |
| rs12306245 | 1.00[JPT][hapmap] |
| rs12306337 | 1.00[ASN][1000 genomes] |
| rs12307610 | 1.00[JPT][hapmap] |
| rs12311263 | 1.00[JPT][hapmap] |
| rs12311861 | 1.00[JPT][hapmap] |
| rs12312128 | 1.00[JPT][hapmap] |
| rs12314360 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs12314822 | 1.00[JPT][hapmap] |
| rs12318215 | 1.00[JPT][hapmap] |
| rs12385824 | 0.82[ASN][1000 genomes] |
| rs12809190 | 0.84[EUR][1000 genomes] |
| rs12812133 | 0.88[EUR][1000 genomes] |
| rs12812856 | 0.84[EUR][1000 genomes] |
| rs12815106 | 0.87[EUR][1000 genomes] |
| rs12817900 | 0.84[EUR][1000 genomes] |
| rs12822141 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12824174 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12827693 | 0.81[EUR][1000 genomes] |
| rs12827867 | 0.81[EUR][1000 genomes] |
| rs12827904 | 0.81[EUR][1000 genomes] |
| rs12829580 | 0.81[EUR][1000 genomes] |
| rs12833793 | 0.84[EUR][1000 genomes] |
| rs1476902 | 1.00[JPT][hapmap] |
| rs16917739 | 1.00[JPT][hapmap] |
| rs16917746 | 1.00[JPT][hapmap] |
| rs2159889 | 1.00[JPT][hapmap] |
| rs28372697 | 0.82[ASN][1000 genomes] |
| rs34720246 | 0.84[EUR][1000 genomes] |
| rs34976145 | 0.88[EUR][1000 genomes] |
| rs34978963 | 0.81[EUR][1000 genomes] |
| rs35253464 | 0.87[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs35337965 | 0.84[EUR][1000 genomes] |
| rs35365089 | 0.81[EUR][1000 genomes] |
| rs35379247 | 0.83[EUR][1000 genomes] |
| rs35701636 | 0.88[EUR][1000 genomes] |
| rs35818804 | 0.84[EUR][1000 genomes] |
| rs35896395 | 0.84[EUR][1000 genomes] |
| rs57541397 | 1.00[ASN][1000 genomes] |
| rs58333563 | 0.90[ASN][1000 genomes] |
| rs58503001 | 0.90[ASN][1000 genomes] |
| rs58544193 | 0.90[ASN][1000 genomes] |
| rs58860639 | 1.00[ASN][1000 genomes] |
| rs6487313 | 1.00[JPT][hapmap];0.80[EUR][1000 genomes] |
| rs6487333 | 1.00[JPT][hapmap] |
| rs6487347 | 1.00[JPT][hapmap] |
| rs6487354 | 1.00[JPT][hapmap] |
| rs7132012 | 1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs7139182 | 1.00[JPT][hapmap] |
| rs71447527 | 0.87[EUR][1000 genomes] |
| rs71447528 | 0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7303757 | 1.00[JPT][hapmap] |
| rs7316051 | 1.00[JPT][hapmap] |
| rs73244416 | 0.88[EUR][1000 genomes] |
| rs7960582 | 1.00[JPT][hapmap] |
| rs7968935 | 1.00[JPT][hapmap] |
| rs7977372 | 1.00[JPT][hapmap] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:8811800-8829600 | Weak transcription | Thymus | Thymus |
| 2 | chr12:8821600-8845000 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
| 3 | chr12:8823800-8828000 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
| 4 | chr12:8824000-8833600 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 5 | chr12:8824600-8825000 | Enhancers | Adipose Nuclei | Adipose |
