Variant report

Variant	rs12809190
Chromosome Location	chr12:8813595-8813596
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr12:8813577-8813706	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000255829	TF binding region
MFAP5	TF binding region

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12302099	0.87[EUR][1000 genomes]
rs12811351	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12812133	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12812856	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12815106	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12817900	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12822141	0.84[EUR][1000 genomes]
rs12824174	0.84[EUR][1000 genomes]
rs12827693	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12827867	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12827904	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12829580	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12833793	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17802192	0.92[EUR][1000 genomes]
rs2377491	0.84[EUR][1000 genomes]
rs34716337	0.92[EUR][1000 genomes]
rs34720246	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34817631	0.92[EUR][1000 genomes]
rs34976145	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34978963	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35253464	0.90[EUR][1000 genomes]
rs35337965	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35365089	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35379247	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35565662	0.92[EUR][1000 genomes]
rs35701636	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35818804	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35866343	0.91[EUR][1000 genomes]
rs35896395	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56941823	0.95[EUR][1000 genomes]
rs6487313	0.84[EUR][1000 genomes]
rs71447526	0.91[EUR][1000 genomes]
rs71447527	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73244416	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8792600-8814600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr12:8799200-8813600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr12:8810200-8813800	Enhancers	Placenta	Placenta
4	chr12:8811200-8815200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr12:8811400-8813600	Weak transcription	NHDF-Ad	bronchial
6	chr12:8811400-8813800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr12:8811400-8814600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr12:8811400-8815000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr12:8811400-8815000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr12:8811400-8815200	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr12:8811600-8814600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr12:8811600-8814600	Weak transcription	Osteobl	bone
13	chr12:8811600-8814800	Weak transcription	HMEC	breast
14	chr12:8811600-8815400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr12:8811800-8829600	Weak transcription	Thymus	Thymus
16	chr12:8812000-8814200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr12:8812200-8813600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr12:8812200-8813800	Weak transcription	NH-A	brain
19	chr12:8812600-8813800	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr12:8812600-8814800	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr12:8812800-8813800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr12:8812800-8814200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr12:8813000-8813800	Active TSS	HSMMtube	muscle
24	chr12:8813000-8815800	Flanking Active TSS	Adipose Nuclei	Adipose
25	chr12:8813000-8816400	Flanking Active TSS	Hela-S3	cervix
26	chr12:8813400-8813600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr12:8813400-8813800	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr12:8813400-8814000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr12:8813400-8814200	Active TSS	Right Atrium	heart
30	chr12:8813400-8814800	Flanking Active TSS	NHEK	skin
31	chr12:8813400-8815000	Active TSS	Fetal Muscle Leg	muscle
32	chr12:8813400-8815600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr12:8813400-8815600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr12:8813400-8815600	Active TSS	HSMM	muscle

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