Variant report

Variant	rs73244416
Chromosome Location	chr12:8810509-8810510
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:8810056..8810641-chr12:9191699..9192656,3	K562	blood:
2	chr12:8810067..8810631-chr12:9067241..9067912,2	K562	blood:

Variant related genes	Relation type
ENSG00000111752	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12302099	0.91[EUR][1000 genomes]
rs12809190	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12811351	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12812133	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12812856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12815106	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12817900	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12822141	0.88[EUR][1000 genomes]
rs12824174	0.88[EUR][1000 genomes]
rs12827693	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12827867	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12827904	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12829580	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12833793	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17802192	0.88[EUR][1000 genomes]
rs2377491	0.88[EUR][1000 genomes]
rs34716337	0.88[EUR][1000 genomes]
rs34720246	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34817631	0.91[EUR][1000 genomes]
rs34976145	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34978963	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35253464	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35337965	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35365089	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35379247	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35565662	0.88[EUR][1000 genomes]
rs35701636	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35818804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35866343	0.86[EUR][1000 genomes]
rs35896395	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56941823	0.91[EUR][1000 genomes]
rs6487313	0.88[EUR][1000 genomes]
rs71447526	0.86[EUR][1000 genomes]
rs71447527	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71447528	0.83[EUR][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8789600-8813400	Weak transcription	Fetal Muscle Leg	muscle
2	chr12:8792600-8814600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr12:8799200-8813600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr12:8801200-8810600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr12:8802400-8810600	Weak transcription	NHDF-Ad	bronchial
6	chr12:8807800-8811000	Weak transcription	Fetal Thymus	thymus
7	chr12:8808600-8810600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr12:8808600-8811200	Weak transcription	HSMMtube	muscle
9	chr12:8809400-8813400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr12:8809800-8812200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr12:8810200-8810600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr12:8810200-8811200	Enhancers	HSMM	muscle
13	chr12:8810200-8812000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr12:8810200-8813800	Enhancers	Placenta	Placenta
15	chr12:8810400-8810600	Enhancers	Hela-S3	cervix
16	chr12:8810400-8810800	Enhancers	NHEK	skin
17	chr12:8810400-8811200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr12:8810400-8811400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr12:8810400-8811400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr12:8810400-8811400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr12:8810400-8811600	Enhancers	HMEC	breast
22	chr12:8810400-8811600	Enhancers	Osteobl	bone
23	chr12:8810400-8812000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr12:8810400-8812200	Enhancers	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links