Variant report
| Variant | rs58862465 |
|---|---|
| Chromosome Location | chr3:109338927-109338928 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-TRAT1-10 | chr3:109337851-109338948 | l_2435_chr3:109326606-109338941_whiteBloodCell |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs16855810 | 1.00[AMR][1000 genomes] |
| rs60563567 | 0.81[AFR][1000 genomes];0.90[AMR][1000 genomes] |
| rs6437861 | 1.00[AMR][1000 genomes] |
| rs6792895 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6793082 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7340726 | 0.90[AMR][1000 genomes] |
| rs73850998 | 1.00[AMR][1000 genomes] |
| rs73850999 | 0.89[AMR][1000 genomes] |
| rs73851000 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73851001 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7618622 | 1.00[AMR][1000 genomes] |
| rs7652437 | 1.00[AMR][1000 genomes] |
| rs7652626 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv460814 | chr3:109195046-109381428 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv591268 | chr3:109195046-109381428 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv470827 | chr3:109195046-109433855 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | esv3380847 | chr3:109336862-109339110 | Inactive region | lncRNA | n/a | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
