Variant report

Variant	esv3380847
Chromosome Location	chr3:109336862-109339110
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TRAT1-11	chr3:109338973-109339394	expReg_chr3_7437_+
2	lnc-TRAT1-10	chr3:109336681-109336887	l_2435_chr3:109326606-109338941_whiteBloodCell
3	lnc-TRAT1-10	chr3:109337851-109338948	l_2435_chr3:109326606-109338941_whiteBloodCell

Extended variants
information (count: 46 )
Associated
traits (count: 57 )

Variant overlapped rSNPs/rCNVs (count:46 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs375191780	chr3:109336878-109336879	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs183908076	chr3:109337889-109337890	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs189127434	chr3:109337939-109337940	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs564925875	chr3:109338103-109338104	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs373909851	chr3:109338128-109338129	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs16855810	chr3:109338129-109338130	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs77590456	chr3:109338131-109338132	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs536341407	chr3:109338185-109338186	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs556666714	chr3:109338198-109338199	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs576541292	chr3:109338212-109338213	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs545618029	chr3:109338312-109338313	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs572216964	chr3:109338323-109338324	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs539387287	chr3:109338385-109338386	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs373043828	chr3:109338403-109338404	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs10699314	chr3:109338407-109338408	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs386664504	chr3:109338408-109338409	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs55825807	chr3:109338409-109338410	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs370424133	chr3:109338410-109338411	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs58560354	chr3:109338411-109338412	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs565544218	chr3:109338460-109338461	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs572799338	chr3:109338472-109338473	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs34128768	chr3:109338473-109338474	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs142488651	chr3:109338551-109338552	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs566322357	chr3:109338556-109338557	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs371317926	chr3:109338559-109338560	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs560856737	chr3:109338600-109338601	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs7340726	chr3:109338661-109338662	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs543129449	chr3:109338683-109338684	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs7340599	chr3:109338694-109338695	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs532170327	chr3:109338714-109338715	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs79515053	chr3:109338772-109338773	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs551972139	chr3:109338779-109338780	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs565590366	chr3:109338797-109338798	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs528377577	chr3:109338848-109338849	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
35	rs1612794	chr3:109338852-109338853	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs567552139	chr3:109338877-109338878	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs58862465	chr3:109338927-109338928	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs541009000	chr3:109338974-109338975	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs538832410	chr3:109338987-109338988	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs559200542	chr3:109338995-109338996	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs572738500	chr3:109338997-109338998	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
42	rs541741581	chr3:109338998-109338999	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
43	rs555326879	chr3:109339050-109339051	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs574332987	chr3:109339069-109339070	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs560753584	chr3:109339102-109339103	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
46	rs140868276	chr3:109339107-109339108	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:57)

Disease	PMID	Source
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Hirschsprung''s Disease	21712996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Neurodevelopmental disorder	22521361	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Breast cancer	16461572	CNVD
Neuroblastoma	17533364	CNVD
microdeletion syndrome	22180640	CNVD
Cervical Cancer	21857958	CNVD
Melanoma	21693616	CNVD
Lung cancer	21426551	CNVD
Cancer	21637783	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oral cancer	21386901	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	22065749	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	16608533	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Renal cell carcinoma	18765545	CNVD
Developmental delay	22180640	CNVD
Hodgkin''s lymphoma	17606441	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	21858162	CNVD
Multiple myeloma	17550852	CNVD
Ductal carcinoma	22052326	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links