Variant report
| Variant | rs1612794 |
|---|---|
| Chromosome Location | chr3:109338852-109338853 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-TRAT1-10 | chr3:109337851-109338948 | l_2435_chr3:109326606-109338941_whiteBloodCell |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs11708820 | 0.93[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs11716678 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs12485442 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs1528906 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs1534634 | 0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs1544022 | 0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs16855902 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs1732191 | 0.97[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1732206 | 0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs17656128 | 0.85[EUR][1000 genomes] |
| rs1919468 | 0.95[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs1950051 | 0.95[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs1950053 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs2222787 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs6775168 | 0.87[EUR][1000 genomes] |
| rs72491106 | 0.85[EUR][1000 genomes] |
| rs7653616 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv460814 | chr3:109195046-109381428 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv591268 | chr3:109195046-109381428 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv470827 | chr3:109195046-109433855 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | esv3380847 | chr3:109336862-109339110 | Inactive region | lncRNA | n/a | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
