Variant report
| Variant | rs72491106 |
|---|---|
| Chromosome Location | chr3:109416299-109416300 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:109414982..109417591-chr3:109417920..109420582,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs11708820 | 0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11716678 | 0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12485442 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1528906 | 0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1534634 | 0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1544022 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs1612794 | 0.85[EUR][1000 genomes] |
| rs16855902 | 0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1732191 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs1732206 | 0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs17656128 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1919468 | 0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1950051 | 0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1950053 | 0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2222787 | 0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6775168 | 0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7653616 | 0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv470827 | chr3:109195046-109433855 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | esv2555952 | chr3:109414448-109417041 | ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | esv18949 | chr3:109415099-109416599 | ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:109414200-109416600 | ZNF genes & repeats | Dnd41 | blood |
