Variant report

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11716678	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12485442	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1528906	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1534634	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1544022	0.84[EUR][1000 genomes]
rs1612794	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16855902	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1732191	0.84[EUR][1000 genomes]
rs1732206	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17656128	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1919468	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1950051	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1950053	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2222787	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6775168	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72491106	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7653616	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470827	chr3:109195046-109433855	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:109402600-109406800	Enhancers	Rectal Smooth Muscle	rectum
2	chr3:109403600-109405200	Enhancers	Colon Smooth Muscle	Colon
3	chr3:109403600-109405200	Enhancers	Pancreas	Pancrea
4	chr3:109403600-109405200	Enhancers	Stomach Mucosa	stomach
5	chr3:109403600-109405200	Enhancers	HMEC	breast
6	chr3:109403800-109405000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr3:109403800-109405000	Enhancers	NH-A	brain
8	chr3:109403800-109405200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:109403800-109405200	Enhancers	Hela-S3	cervix
10	chr3:109404000-109404600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr3:109404000-109404800	Enhancers	Aorta	Aorta
12	chr3:109404000-109404800	Enhancers	HSMMtube	muscle
13	chr3:109404000-109405000	Enhancers	A549	lung
14	chr3:109404000-109405200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr3:109404200-109404600	Enhancers	NHLF	lung
16	chr3:109404400-109404800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr3:109404400-109404800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr3:109404400-109405000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr3:109404400-109405000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr3:109404400-109405200	Enhancers	Muscle Satellite Cultured Cells	--
21	chr3:109404400-109405200	Enhancers	Osteobl	bone

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