Variant report

Variant	rs58870426
Chromosome Location	chr3:110556360-110556361
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:110554837..110556884-chr3:110560750..110562467,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11918093	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11922108	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1462803	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16857288	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16857301	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16857306	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1871025	1.00[AMR][1000 genomes]
rs57264383	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58065447	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59417953	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61049752	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61348188	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6773723	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6803513	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6805390	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72948735	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72948745	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72948746	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72948768	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72948774	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72948776	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72948779	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72948780	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72948781	1.00[EUR][1000 genomes]
rs72948783	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72948785	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72948797	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72950720	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72950756	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72950758	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7634941	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010230	chr3:110204439-110588814	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv536688	chr3:110204439-110588814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1011034	chr3:110209344-110559021	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv536689	chr3:110209344-110559021	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv1014199	chr3:110293896-110754155	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110556200-110556400	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell

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