Variant report

Variant	rs61348188
Chromosome Location	chr3:110607819-110607820
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11918093	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11922108	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1462803	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16857288	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16857301	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16857306	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1871025	0.81[AMR][1000 genomes]
rs57264383	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58065447	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58870426	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59417953	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61049752	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6773723	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6803513	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6805390	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72948735	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72948745	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72948746	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72948768	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72948774	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72948776	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72948779	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72948780	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72948781	1.00[EUR][1000 genomes]
rs72948783	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72948785	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72948797	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72950720	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72950756	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72950758	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7634941	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1014199	chr3:110293896-110754155	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110607400-110608200	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr3:110607600-110608000	Flanking Active TSS	H1 Cell Line	embryonic stem cell
3	chr3:110607600-110608000	Active TSS	HUES48 Cell Line	embryonic stem cell
4	chr3:110607600-110608000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr3:110607600-110608000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:110607600-110608200	Active TSS	H9 Cell Line	embryonic stem cell
7	chr3:110607600-110608200	Active TSS	HUES64 Cell Line	embryonic stem cell
8	chr3:110607600-110608200	Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr3:110607600-110608200	Active TSS	Esophagus	oesophagus
10	chr3:110607600-110608200	Active TSS	Pancreas	Pancrea
11	chr3:110607800-110608000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
12	chr3:110607800-110608200	Active TSS	Fetal Muscle Trunk	muscle
13	chr3:110607800-110608200	Active TSS	Fetal Stomach	stomach
14	chr3:110607800-110619600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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