Variant report

Variant	rs58876449
Chromosome Location	chr16:73037025-73037026
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11860416	0.82[ASN][1000 genomes]
rs55989215	0.82[ASN][1000 genomes]
rs6499604	0.93[ASN][1000 genomes]
rs6499605	0.84[ASN][1000 genomes]
rs73594757	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906898	chr16:73017684-73128146	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:73033200-73037800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr16:73034600-73049400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr16:73035000-73040200	Weak transcription	Psoas Muscle	Psoas
4	chr16:73035000-73042200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr16:73035000-73044000	Weak transcription	Left Ventricle	heart
6	chr16:73035000-73044000	Weak transcription	Pancreas	Pancrea
7	chr16:73035000-73050400	Weak transcription	NHLF	lung
8	chr16:73035200-73037400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr16:73035200-73044000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr16:73035200-73044000	Weak transcription	Brain Cingulate Gyrus	brain
11	chr16:73035400-73040200	Weak transcription	NHDF-Ad	bronchial
12	chr16:73035400-73040400	Weak transcription	A549	lung
13	chr16:73035400-73041200	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr16:73035400-73042400	Weak transcription	Adipose Nuclei	Adipose
15	chr16:73035400-73042800	Weak transcription	Fetal Lung	lung
16	chr16:73035400-73044000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr16:73035400-73044000	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr16:73035400-73044000	Weak transcription	Fetal Muscle Trunk	muscle
19	chr16:73035400-73044000	Weak transcription	Spleen	Spleen
20	chr16:73035400-73049000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr16:73035600-73053000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr16:73035800-73040200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr16:73035800-73044000	Weak transcription	HepG2	liver
24	chr16:73036000-73037400	Enhancers	Placenta Amnion	Placenta Amnion
25	chr16:73036200-73038000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr16:73036200-73044000	Weak transcription	Fetal Muscle Leg	muscle
27	chr16:73036200-73049000	Weak transcription	Fetal Intestine Small	intestine
28	chr16:73036400-73044400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr16:73036600-73041800	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr16:73036800-73037200	Weak transcription	Placenta	Placenta
31	chr16:73036800-73037400	Enhancers	Fetal Brain Male	brain
32	chr16:73036800-73039800	Weak transcription	Muscle Satellite Cultured Cells	--

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