Variant report

Variant	rs6499605
Chromosome Location	chr16:73035500-73035501
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:73028886..73036567-chr16:73043066..73055500,18	MCF-7	breast:
2	chr16:72984448..72985996-chr16:73034182..73035751,2	MCF-7	breast:
3	chr16:73028923..73036951-chr16:73080210..73093920,29	MCF-7	breast:
4	chr16:72957455..72959475-chr16:73034400..73036279,2	MCF-7	breast:
5	chr16:73032858..73036889-chr16:73037121..73042124,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272330	Chromatin interaction
ENSG00000140836	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11075959	1.00[CEU][hapmap]
rs11860416	1.00[CEU][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs12373097	0.85[JPT][hapmap]
rs55989215	0.81[ASN][1000 genomes]
rs58876449	0.84[ASN][1000 genomes]
rs6416746	0.85[JPT][hapmap]
rs6499604	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs73594757	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906898	chr16:73017684-73128146	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:73033200-73037800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr16:73034200-73036800	Weak transcription	Fetal Brain Male	brain
3	chr16:73034600-73035600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr16:73034600-73049400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr16:73034800-73035800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr16:73034800-73035800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr16:73035000-73035600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr16:73035000-73035600	ZNF genes & repeats	Fetal Muscle Leg	muscle
9	chr16:73035000-73035800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr16:73035000-73035800	ZNF genes & repeats	Fetal Stomach	stomach
11	chr16:73035000-73036000	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr16:73035000-73036200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr16:73035000-73036200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr16:73035000-73036200	ZNF genes & repeats	Fetal Intestine Small	intestine
15	chr16:73035000-73036200	Weak transcription	HSMMtube	muscle
16	chr16:73035000-73036400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr16:73035000-73040200	Weak transcription	Psoas Muscle	Psoas
18	chr16:73035000-73042200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr16:73035000-73044000	Weak transcription	Left Ventricle	heart
20	chr16:73035000-73044000	Weak transcription	Pancreas	Pancrea
21	chr16:73035000-73050400	Weak transcription	NHLF	lung
22	chr16:73035200-73035600	ZNF genes & repeats	Placenta	Placenta
23	chr16:73035200-73035800	ZNF genes & repeats	HepG2	liver
24	chr16:73035200-73036200	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr16:73035200-73036200	Weak transcription	Stomach Smooth Muscle	stomach
26	chr16:73035200-73036400	Weak transcription	HSMM	muscle
27	chr16:73035200-73036800	Weak transcription	Osteobl	bone
28	chr16:73035200-73037400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr16:73035200-73044000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr16:73035200-73044000	Weak transcription	Brain Cingulate Gyrus	brain
31	chr16:73035400-73035600	Enhancers	Hela-S3	cervix
32	chr16:73035400-73035800	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr16:73035400-73036000	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr16:73035400-73040200	Weak transcription	NHDF-Ad	bronchial
35	chr16:73035400-73040400	Weak transcription	A549	lung
36	chr16:73035400-73041200	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr16:73035400-73042400	Weak transcription	Adipose Nuclei	Adipose
38	chr16:73035400-73042800	Weak transcription	Fetal Lung	lung
39	chr16:73035400-73044000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr16:73035400-73044000	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr16:73035400-73044000	Weak transcription	Fetal Muscle Trunk	muscle
42	chr16:73035400-73044000	Weak transcription	Spleen	Spleen
43	chr16:73035400-73049000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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