Variant report

Variant	rs6416746
Chromosome Location	chr16:73021094-73021095
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:72986300..72989213-chr16:73020546..73023445,2	MCF-7	breast:
2	chr16:73019871..73021578-chr16:73023673..73025782,2	MCF-7	breast:
3	chr16:73020030..73022108-chr16:73044210..73045920,2	MCF-7	breast:
4	chr16:73019542..73021280-chr16:73082143..73085069,2	MCF-7	breast:
5	chr16:73020484..73022206-chr16:73053719..73056599,2	MCF-7	breast:
6	chr16:73015247..73017675-chr16:73019626..73021160,2	MCF-7	breast:
7	chr16:73018202..73027072-chr16:73088249..73094904,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140836	Chromatin interaction
ENSG00000272250	Chromatin interaction
ENSG00000271009	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11860416	0.85[CHD][hapmap]
rs6416745	0.82[EUR][1000 genomes]
rs6499604	0.83[CHB][hapmap];0.87[CHD][hapmap];0.86[JPT][hapmap]
rs6499605	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906898	chr16:73017684-73128146	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:73008800-73023000	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr16:73012800-73023400	Weak transcription	A549	lung
3	chr16:73013200-73023400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr16:73013200-73023600	Weak transcription	Small Intestine	intestine
5	chr16:73015200-73026200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr16:73015800-73024200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr16:73016200-73023200	Enhancers	Placenta Amnion	Placenta Amnion
8	chr16:73016600-73022000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr16:73016800-73028000	Enhancers	Left Ventricle	heart
10	chr16:73017200-73023800	Enhancers	Fetal Muscle Leg	muscle
11	chr16:73017200-73025400	Weak transcription	Fetal Kidney	kidney
12	chr16:73017400-73024600	Enhancers	Pancreas	Pancrea
13	chr16:73018200-73023600	Weak transcription	Fetal Intestine Large	intestine
14	chr16:73018200-73023800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr16:73018400-73023400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr16:73018400-73023400	Weak transcription	Duodenum Mucosa	Duodenum
17	chr16:73018600-73022400	Enhancers	Brain Anterior Caudate	brain
18	chr16:73018600-73023200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr16:73018600-73023200	Weak transcription	Stomach Mucosa	stomach
20	chr16:73018600-73023400	Weak transcription	Gastric	stomach
21	chr16:73018800-73023400	Enhancers	NHDF-Ad	bronchial
22	chr16:73019000-73021400	Enhancers	Fetal Thymus	thymus
23	chr16:73019000-73021400	Enhancers	Rectal Smooth Muscle	rectum
24	chr16:73019000-73022400	Enhancers	Aorta	Aorta
25	chr16:73019000-73023200	Enhancers	Right Atrium	heart
26	chr16:73019000-73023400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr16:73019000-73027200	Enhancers	Lung	lung
28	chr16:73019000-73035200	Enhancers	Placenta	Placenta
29	chr16:73019200-73023200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr16:73019400-73024800	Enhancers	Right Ventricle	heart
31	chr16:73019600-73025800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr16:73019800-73023000	Enhancers	Psoas Muscle	Psoas
33	chr16:73019800-73023400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr16:73019800-73023400	Weak transcription	Brain Angular Gyrus	brain
35	chr16:73019800-73023600	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr16:73019800-73023600	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr16:73019800-73024000	Enhancers	Colon Smooth Muscle	Colon
38	chr16:73019800-73024000	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr16:73019800-73031800	Enhancers	Fetal Lung	lung
40	chr16:73020000-73022400	Enhancers	Esophagus	oesophagus
41	chr16:73020000-73023200	Weak transcription	Brain Substantia Nigra	brain
42	chr16:73020200-73021200	Weak transcription	Hela-S3	cervix
43	chr16:73020200-73021200	Enhancers	NHEK	skin
44	chr16:73020200-73021400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr16:73020200-73022200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr16:73020200-73022200	Weak transcription	Brain Hippocampus Middle	brain
47	chr16:73020200-73022800	Weak transcription	Osteobl	bone
48	chr16:73020200-73023000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr16:73020200-73023200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr16:73020200-73023200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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