Variant report

Variant	rs11075959
Chromosome Location	chr16:73035045-73035046
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:73028886..73036567-chr16:73043066..73055500,18	MCF-7	breast:
2	chr16:72984448..72985996-chr16:73034182..73035751,2	MCF-7	breast:
3	chr16:73028923..73036951-chr16:73080210..73093920,29	MCF-7	breast:
4	chr16:72957455..72959475-chr16:73034400..73036279,2	MCF-7	breast:
5	chr16:73032577..73035184-chr16:73230338..73233268,2	MCF-7	breast:
6	chr16:73027345..73035402-chr16:73051107..73057309,10	MCF-7	breast:
7	chr16:73032858..73036889-chr16:73037121..73042124,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272330	Chromatin interaction
ENSG00000140836	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11860416	1.00[CEU][hapmap]
rs12598340	1.00[AMR][1000 genomes]
rs28688024	0.82[EUR][1000 genomes]
rs6499604	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs6499605	1.00[CEU][hapmap]
rs7203164	0.82[EUR][1000 genomes]
rs74030209	0.82[EUR][1000 genomes]
rs74030210	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906898	chr16:73017684-73128146	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:73019000-73035200	Enhancers	Placenta	Placenta
2	chr16:73033200-73037800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr16:73033400-73035200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr16:73033400-73035200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr16:73033400-73035200	Flanking Active TSS	HepG2	liver
6	chr16:73033400-73035400	Enhancers	NHDF-Ad	bronchial
7	chr16:73033600-73035400	Flanking Active TSS	Hela-S3	cervix
8	chr16:73034200-73036800	Weak transcription	Fetal Brain Male	brain
9	chr16:73034400-73035200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr16:73034400-73035400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr16:73034600-73035200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
12	chr16:73034600-73035200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr16:73034600-73035400	ZNF genes & repeats	A549	lung
14	chr16:73034600-73035600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr16:73034600-73049400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr16:73034800-73035200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr16:73034800-73035200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr16:73034800-73035200	Enhancers	Brain Cingulate Gyrus	brain
19	chr16:73034800-73035200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr16:73034800-73035200	Active TSS	Stomach Smooth Muscle	stomach
21	chr16:73034800-73035200	Enhancers	HSMM	muscle
22	chr16:73034800-73035200	Enhancers	Osteobl	bone
23	chr16:73034800-73035400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr16:73034800-73035400	ZNF genes & repeats	Adipose Nuclei	Adipose
25	chr16:73034800-73035400	Enhancers	Fetal Muscle Trunk	muscle
26	chr16:73034800-73035400	Enhancers	HMEC	breast
27	chr16:73034800-73035400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
28	chr16:73034800-73035800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr16:73034800-73035800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr16:73035000-73035200	Enhancers	Brain Anterior Caudate	brain
31	chr16:73035000-73035200	Enhancers	Brain Hippocampus Middle	brain
32	chr16:73035000-73035200	Enhancers	Brain Inferior Temporal Lobe	brain
33	chr16:73035000-73035200	Enhancers	Brain Substantia Nigra	brain
34	chr16:73035000-73035200	Weak transcription	Fetal Lung	lung
35	chr16:73035000-73035200	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr16:73035000-73035400	Enhancers	Muscle Satellite Cultured Cells	--
37	chr16:73035000-73035400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr16:73035000-73035400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
39	chr16:73035000-73035400	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr16:73035000-73035600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr16:73035000-73035600	ZNF genes & repeats	Fetal Muscle Leg	muscle
42	chr16:73035000-73035800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr16:73035000-73035800	ZNF genes & repeats	Fetal Stomach	stomach
44	chr16:73035000-73036000	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr16:73035000-73036200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr16:73035000-73036200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr16:73035000-73036200	ZNF genes & repeats	Fetal Intestine Small	intestine
48	chr16:73035000-73036200	Weak transcription	HSMMtube	muscle
49	chr16:73035000-73036400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr16:73035000-73040200	Weak transcription	Psoas Muscle	Psoas

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