Variant report

Variant	rs7203164
Chromosome Location	chr16:73060410-73060411
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:73058271..73060863-chr16:73088850..73091395,2	MCF-7	breast:
2	chr16:73052296..73055168-chr16:73058729..73060929,2	K562	blood:
3	chr16:73059653..73061872-chr16:74329579..74331696,2	MCF-7	breast:
4	chr16:73050220..73052813-chr16:73058452..73060426,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000103035	Chromatin interaction
ENSG00000261404	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11075959	0.82[EUR][1000 genomes]
rs11860416	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28688024	1.00[EUR][1000 genomes]
rs55989215	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6499604	1.00[EUR][1000 genomes]
rs73594757	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs74030209	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs74030210	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906898	chr16:73017684-73128146	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:73049400-73069200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr16:73052400-73064400	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr16:73053600-73062000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr16:73054000-73063800	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr16:73054600-73062000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr16:73054600-73065200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr16:73054800-73061400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr16:73055000-73061200	Weak transcription	Duodenum Mucosa	Duodenum
9	chr16:73055200-73061400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr16:73055200-73062200	Enhancers	A549	lung
11	chr16:73055200-73076400	Weak transcription	Brain Angular Gyrus	brain
12	chr16:73055400-73062200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr16:73055400-73066600	Weak transcription	Hela-S3	cervix
14	chr16:73057200-73063400	Enhancers	Psoas Muscle	Psoas
15	chr16:73057800-73063400	Enhancers	Left Ventricle	heart
16	chr16:73058200-73060600	Enhancers	Fetal Muscle Trunk	muscle
17	chr16:73058200-73062200	Weak transcription	Fetal Thymus	thymus
18	chr16:73058800-73061600	Enhancers	HSMM	muscle
19	chr16:73059000-73072000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr16:73059200-73062600	Enhancers	HSMMtube	muscle
21	chr16:73059400-73061800	Enhancers	Fetal Heart	heart
22	chr16:73059400-73063000	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr16:73059400-73065400	Weak transcription	Brain Germinal Matrix	brain
24	chr16:73059400-73076400	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr16:73059600-73060800	Weak transcription	Liver	Liver
26	chr16:73059600-73061400	Weak transcription	Fetal Intestine Small	intestine
27	chr16:73059600-73061600	Weak transcription	Stomach Mucosa	stomach
28	chr16:73059600-73062000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr16:73059600-73062200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr16:73059600-73066600	Weak transcription	Brain Hippocampus Middle	brain
31	chr16:73059600-73067000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr16:73059600-73069800	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr16:73059800-73060800	Weak transcription	Colon Smooth Muscle	Colon
34	chr16:73059800-73061200	Weak transcription	Fetal Intestine Large	intestine
35	chr16:73059800-73061200	Weak transcription	Placenta	Placenta
36	chr16:73059800-73065200	Weak transcription	Fetal Brain Female	brain
37	chr16:73059800-73066000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr16:73059800-73066000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr16:73059800-73069600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr16:73059800-73070000	Weak transcription	Colonic Mucosa	Colon
41	chr16:73060000-73061000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr16:73060000-73061000	Weak transcription	Stomach Smooth Muscle	stomach
43	chr16:73060000-73061200	Weak transcription	Fetal Kidney	kidney
44	chr16:73060000-73061200	Weak transcription	Fetal Stomach	stomach
45	chr16:73060000-73061200	Weak transcription	Ovary	ovary
46	chr16:73060000-73061200	Weak transcription	Pancreas	Pancrea
47	chr16:73060000-73061200	Weak transcription	NHLF	lung
48	chr16:73060000-73061400	Weak transcription	Gastric	stomach
49	chr16:73060000-73061400	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr16:73060000-73061400	Weak transcription	Small Intestine	intestine

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