Variant report

Variant	rs58878584
Chromosome Location	chr11:121638782-121638783
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:121632571..121635461-chr11:121638427..121640406,2	K562	blood:
2	chr11:121632571..121635609-chr11:121638427..121640448,3	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs59491349	1.00[AMR][1000 genomes]
rs7122477	1.00[AMR][1000 genomes]
rs7126804	1.00[AMR][1000 genomes]
rs7127000	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7948048	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898428	chr11:121568262-121671976	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv832287	chr11:121575379-121722735	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv2753555	chr11:121630790-121646790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121634400-121641600	Weak transcription	Fetal Heart	heart
2	chr11:121634400-121643600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr11:121635200-121638800	Enhancers	Fetal Stomach	stomach
4	chr11:121636600-121639200	Enhancers	Primary B cells from peripheral blood	blood
5	chr11:121637000-121638800	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr11:121637000-121639000	Enhancers	Primary B cells from cord blood	blood
7	chr11:121637000-121639200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr11:121637400-121638800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr11:121637400-121638800	Enhancers	GM12878-XiMat	blood
10	chr11:121637600-121638800	Enhancers	Primary hematopoietic stem cells	blood
11	chr11:121637600-121638800	Enhancers	Brain Germinal Matrix	brain
12	chr11:121637600-121643000	Weak transcription	Fetal Brain Female	brain
13	chr11:121637600-121648000	Weak transcription	Fetal Muscle Leg	muscle
14	chr11:121637800-121638800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:121638000-121638800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr11:121638400-121638800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr11:121638400-121638800	Enhancers	Brain Anterior Caudate	brain
18	chr11:121638400-121638800	Enhancers	Fetal Thymus	thymus
19	chr11:121638400-121638800	Enhancers	Right Atrium	heart
20	chr11:121638400-121638800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
21	chr11:121638600-121638800	Enhancers	Brain Substantia Nigra	brain

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