Variant report

Variant	rs7948048
Chromosome Location	chr11:121633381-121633382
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:121632571..121635461-chr11:121638427..121640406,2	K562	blood:
2	chr11:121632571..121635609-chr11:121638427..121640448,3	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs58878584	1.00[AMR][1000 genomes]
rs59491349	1.00[AMR][1000 genomes]
rs7122477	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7126804	1.00[AMR][1000 genomes]
rs7127000	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898428	chr11:121568262-121671976	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv832287	chr11:121575379-121722735	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv2753555	chr11:121630790-121646790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121625600-121633600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:121626200-121633800	Weak transcription	Fetal Kidney	kidney
3	chr11:121627200-121633400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr11:121628800-121636200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:121629200-121633400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr11:121632000-121633400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:121632000-121633600	Enhancers	Brain Anterior Caudate	brain
8	chr11:121632000-121634800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr11:121632000-121634800	Enhancers	Fetal Stomach	stomach
10	chr11:121632200-121633400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr11:121632200-121633400	Enhancers	Fetal Brain Female	brain
12	chr11:121632600-121633400	Enhancers	Brain Germinal Matrix	brain
13	chr11:121632600-121634000	Enhancers	Fetal Muscle Trunk	muscle
14	chr11:121632600-121634000	Enhancers	Fetal Muscle Leg	muscle
15	chr11:121632800-121633400	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr11:121632800-121634200	Enhancers	Fetal Brain Male	brain
17	chr11:121633200-121633400	Enhancers	Brain Hippocampus Middle	brain
18	chr11:121633200-121633400	Enhancers	Stomach Smooth Muscle	stomach
19	chr11:121633200-121633600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr11:121633200-121633600	Enhancers	Brain Substantia Nigra	brain
21	chr11:121633200-121634000	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr11:121633200-121634000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr11:121633200-121635000	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr11:121633200-121635000	Enhancers	Primary B cells from peripheral blood	blood
25	chr11:121633200-121635400	Enhancers	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links