Variant report

Variant	rs58878631
Chromosome Location	chr11:71206508-71206509
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:71205951..71209347-chr11:71211780..71215363,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000172890	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10160376	1.00[ASN][1000 genomes]
rs10160536	1.00[ASN][1000 genomes]
rs12275637	0.96[ASN][1000 genomes]
rs12285566	0.96[ASN][1000 genomes]
rs12291219	1.00[ASN][1000 genomes]
rs2276355	0.96[ASN][1000 genomes]
rs2298775	1.00[ASN][1000 genomes]
rs28364616	0.96[ASN][1000 genomes]
rs28364772	0.86[ASN][1000 genomes]
rs28364773	0.86[ASN][1000 genomes]
rs3794059	0.96[ASN][1000 genomes]
rs3794061	0.96[ASN][1000 genomes]
rs3794063	0.96[ASN][1000 genomes]
rs3794068	0.96[ASN][1000 genomes]
rs3814732	0.96[ASN][1000 genomes]
rs3819215	0.96[ASN][1000 genomes]
rs56855873	0.96[ASN][1000 genomes]
rs57174491	1.00[ASN][1000 genomes]
rs57615441	0.96[ASN][1000 genomes]
rs59157735	0.83[ASN][1000 genomes]
rs59319709	1.00[ASN][1000 genomes]
rs59948897	0.96[ASN][1000 genomes]
rs60600601	1.00[ASN][1000 genomes]
rs61175194	1.00[ASN][1000 genomes]
rs61440863	0.96[ASN][1000 genomes]
rs7939135	1.00[ASN][1000 genomes]
rs7939596	1.00[ASN][1000 genomes]
rs7950649	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
2	nsv526973	chr11:71088949-71215880	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	nsv897897	chr11:71088949-71217571	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
4	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
5	nsv897898	chr11:71103143-71211654	Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
6	nsv519224	chr11:71108341-71215880	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
7	nsv1037357	chr11:71162241-71209628	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
8	nsv541085	chr11:71162241-71209628	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
9	nsv1052432	chr11:71167449-71213007	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	9 gene(s)	inside rSNPs	diseases
10	nsv468632	chr11:71200320-71289089	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv555402	chr11:71200320-71289089	Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71165000-71210000	Weak transcription	Psoas Muscle	Psoas
2	chr11:71165800-71218400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr11:71181400-71217800	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr11:71181800-71218000	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr11:71182000-71217600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr11:71182200-71211000	Strong transcription	Liver	Liver
7	chr11:71182200-71216000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr11:71182200-71216200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr11:71182200-71216200	Strong transcription	Rectal Mucosa Donor 31	rectum
10	chr11:71182200-71217800	Strong transcription	Primary T cells from cord blood	blood
11	chr11:71182400-71213800	Strong transcription	Rectal Mucosa Donor 29	rectum
12	chr11:71182400-71217200	Strong transcription	Sigmoid Colon	Sigmoid Colon
13	chr11:71182400-71217600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr11:71182400-71217800	Strong transcription	Duodenum Mucosa	Duodenum
15	chr11:71182600-71210200	Strong transcription	Thymus	Thymus
16	chr11:71182600-71213600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr11:71182800-71216400	Strong transcription	Stomach Smooth Muscle	stomach
18	chr11:71183000-71213400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:71189800-71218400	Strong transcription	Primary neutrophils fromperipheralblood	blood
20	chr11:71195600-71208000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr11:71196200-71209600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr11:71196400-71207600	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr11:71197800-71208400	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr11:71197800-71208600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr11:71197800-71209400	Weak transcription	NHDF-Ad	bronchial
26	chr11:71197800-71211800	Weak transcription	Fetal Brain Male	brain
27	chr11:71198800-71211400	Strong transcription	Adipose Nuclei	Adipose
28	chr11:71199200-71211200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr11:71199200-71211200	Strong transcription	Gastric	stomach
30	chr11:71199400-71214600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr11:71199400-71215600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr11:71199600-71208400	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr11:71199600-71213000	Strong transcription	Primary B cells from cord blood	blood
34	chr11:71199600-71216400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr11:71199600-71218400	Strong transcription	Fetal Intestine Small	intestine
36	chr11:71199800-71208400	Weak transcription	K562	blood
37	chr11:71200000-71215000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr11:71200000-71216000	Strong transcription	Primary T helper cells fromperipheralblood	blood
39	chr11:71200200-71211200	Strong transcription	Cortex derived primary cultured neurospheres	brain
40	chr11:71200200-71213200	Strong transcription	Primary T cells fromperipheralblood	blood
41	chr11:71200200-71216000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr11:71200200-71216400	Strong transcription	Primary B cells from peripheral blood	blood
43	chr11:71200200-71217400	Strong transcription	Fetal Intestine Large	intestine
44	chr11:71200400-71209400	Strong transcription	HSMMtube	muscle
45	chr11:71200400-71210200	Weak transcription	Fetal Heart	heart
46	chr11:71200400-71213200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr11:71200400-71213800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr11:71200400-71216200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr11:71200400-71216400	Strong transcription	Primary T helper cells PMA-I stimulated	--
50	chr11:71200600-71213200	Strong transcription	HUES6 Cell Line	embryonic stem cell

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