Variant report

Variant	rs61440863
Chromosome Location	chr11:71196562-71196563
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:71156994..71165841-chr11:71185066..71202614,31	MCF-7	breast:
2	chr11:71194336..71196595-chr11:71275951..71277679,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000172890	Chromatin interaction
ENSG00000204572	Chromatin interaction
ENSG00000172893	Chromatin interaction
ENSG00000254682	Chromatin interaction

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10160376	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10160536	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10450661	1.00[EUR][1000 genomes]
rs10466698	1.00[EUR][1000 genomes]
rs10466717	1.00[EUR][1000 genomes]
rs11233662	1.00[EUR][1000 genomes]
rs11233679	1.00[EUR][1000 genomes]
rs11233754	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11233871	1.00[EUR][1000 genomes]
rs11233901	1.00[EUR][1000 genomes]
rs11233950	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11234008	1.00[EUR][1000 genomes]
rs11234009	1.00[EUR][1000 genomes]
rs12270619	1.00[EUR][1000 genomes]
rs12271661	1.00[EUR][1000 genomes]
rs12271811	1.00[EUR][1000 genomes]
rs12271894	1.00[EUR][1000 genomes]
rs12271996	1.00[EUR][1000 genomes]
rs12272475	1.00[EUR][1000 genomes]
rs12272819	1.00[EUR][1000 genomes]
rs12274022	1.00[EUR][1000 genomes]
rs12274073	1.00[EUR][1000 genomes]
rs12274363	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12275637	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12277617	1.00[EUR][1000 genomes]
rs12277693	1.00[EUR][1000 genomes]
rs12278475	1.00[EUR][1000 genomes]
rs12280295	1.00[EUR][1000 genomes]
rs12281892	1.00[EUR][1000 genomes]
rs12282060	1.00[EUR][1000 genomes]
rs12283407	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12283656	1.00[EUR][1000 genomes]
rs12285168	1.00[EUR][1000 genomes]
rs12285189	1.00[EUR][1000 genomes]
rs12285333	1.00[EUR][1000 genomes]
rs12285566	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12286197	1.00[EUR][1000 genomes]
rs12286997	1.00[EUR][1000 genomes]
rs12289365	1.00[EUR][1000 genomes]
rs12289373	1.00[EUR][1000 genomes]
rs12291219	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12292886	1.00[EUR][1000 genomes]
rs12293132	1.00[EUR][1000 genomes]
rs12294879	1.00[EUR][1000 genomes]
rs12295554	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17161531	1.00[EUR][1000 genomes]
rs2276355	1.00[ASN][1000 genomes]
rs2298775	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28364616	1.00[ASN][1000 genomes]
rs28364772	0.89[ASN][1000 genomes]
rs28364773	0.89[ASN][1000 genomes]
rs28468070	1.00[EUR][1000 genomes]
rs28481909	1.00[EUR][1000 genomes]
rs28655145	1.00[EUR][1000 genomes]
rs3794059	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3794061	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3794063	1.00[ASN][1000 genomes]
rs3794068	1.00[ASN][1000 genomes]
rs3814732	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3819215	1.00[ASN][1000 genomes]
rs56012338	1.00[EUR][1000 genomes]
rs56120850	1.00[EUR][1000 genomes]
rs56855873	1.00[ASN][1000 genomes]
rs57174491	0.96[ASN][1000 genomes]
rs57615441	1.00[ASN][1000 genomes]
rs58878631	0.96[ASN][1000 genomes]
rs59157735	0.86[ASN][1000 genomes]
rs59319709	0.96[ASN][1000 genomes]
rs59601821	1.00[EUR][1000 genomes]
rs59948897	1.00[ASN][1000 genomes]
rs60600601	0.96[ASN][1000 genomes]
rs61175194	0.96[ASN][1000 genomes]
rs61663342	1.00[EUR][1000 genomes]
rs6592104	1.00[EUR][1000 genomes]
rs73530502	1.00[EUR][1000 genomes]
rs7939135	0.96[ASN][1000 genomes]
rs7939596	0.96[ASN][1000 genomes]
rs7950649	0.86[ASN][1000 genomes]
rs7950991	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
2	nsv526973	chr11:71088949-71215880	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	nsv897897	chr11:71088949-71217571	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
4	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
5	nsv897898	chr11:71103143-71211654	Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
6	nsv519224	chr11:71108341-71215880	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
7	nsv1037357	chr11:71162241-71209628	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
8	nsv541085	chr11:71162241-71209628	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
9	nsv1052432	chr11:71167449-71213007	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71165000-71210000	Weak transcription	Psoas Muscle	Psoas
2	chr11:71165200-71199200	Weak transcription	Right Atrium	heart
3	chr11:71165800-71218400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
4	chr11:71180600-71199000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr11:71180800-71197600	Strong transcription	Fetal Intestine Small	intestine
6	chr11:71180800-71198400	Strong transcription	Cortex derived primary cultured neurospheres	brain
7	chr11:71180800-71199400	Strong transcription	Primary T cells fromperipheralblood	blood
8	chr11:71181400-71217800	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr11:71181800-71218000	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr11:71182000-71197600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr11:71182000-71197800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr11:71182000-71198400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr11:71182000-71198800	Strong transcription	Fetal Muscle Trunk	muscle
14	chr11:71182000-71217600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:71182200-71197800	Strong transcription	Brain Cingulate Gyrus	brain
16	chr11:71182200-71197800	Strong transcription	Brain Inferior Temporal Lobe	brain
17	chr11:71182200-71198000	Strong transcription	Brain Hippocampus Middle	brain
18	chr11:71182200-71198400	Strong transcription	Primary T helper cells PMA-I stimulated	--
19	chr11:71182200-71198400	Strong transcription	Brain Anterior Caudate	brain
20	chr11:71182200-71198600	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr11:71182200-71198600	Strong transcription	Fetal Muscle Leg	muscle
22	chr11:71182200-71198600	Strong transcription	Fetal Stomach	stomach
23	chr11:71182200-71211000	Strong transcription	Liver	Liver
24	chr11:71182200-71216000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr11:71182200-71216200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr11:71182200-71216200	Strong transcription	Rectal Mucosa Donor 31	rectum
27	chr11:71182200-71217800	Strong transcription	Primary T cells from cord blood	blood
28	chr11:71182400-71197000	Strong transcription	Muscle Satellite Cultured Cells	--
29	chr11:71182400-71197600	Strong transcription	Colonic Mucosa	Colon
30	chr11:71182400-71197800	Strong transcription	Primary B cells from cord blood	blood
31	chr11:71182400-71197800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr11:71182400-71197800	Strong transcription	Aorta	Aorta
33	chr11:71182400-71197800	Strong transcription	Brain Angular Gyrus	brain
34	chr11:71182400-71197800	Strong transcription	Fetal Brain Female	brain
35	chr11:71182400-71197800	Strong transcription	Fetal Intestine Large	intestine
36	chr11:71182400-71197800	Strong transcription	Rectal Smooth Muscle	rectum
37	chr11:71182400-71198200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr11:71182400-71198200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr11:71182400-71198400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr11:71182400-71198400	Strong transcription	Primary B cells from peripheral blood	blood
41	chr11:71182400-71198400	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr11:71182400-71198800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr11:71182400-71198800	Strong transcription	GM12878-XiMat	blood
44	chr11:71182400-71199000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr11:71182400-71199600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr11:71182400-71199800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr11:71182400-71213800	Strong transcription	Rectal Mucosa Donor 29	rectum
48	chr11:71182400-71217200	Strong transcription	Sigmoid Colon	Sigmoid Colon
49	chr11:71182400-71217600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr11:71182400-71217800	Strong transcription	Duodenum Mucosa	Duodenum

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