Variant report
Variant | rs12286197 |
---|---|
Chromosome Location | chr11:71239258-71239259 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10160376 | 1.00[EUR][1000 genomes] |
rs10160536 | 1.00[EUR][1000 genomes] |
rs10450661 | 1.00[EUR][1000 genomes] |
rs10466698 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs10466717 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs11233662 | 1.00[EUR][1000 genomes] |
rs11233679 | 1.00[EUR][1000 genomes] |
rs11233754 | 1.00[EUR][1000 genomes] |
rs11233871 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs11233901 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs11233950 | 1.00[EUR][1000 genomes] |
rs11234008 | 1.00[EUR][1000 genomes] |
rs11234009 | 1.00[EUR][1000 genomes] |
rs12270619 | 1.00[EUR][1000 genomes] |
rs12271661 | 1.00[EUR][1000 genomes] |
rs12271811 | 1.00[EUR][1000 genomes] |
rs12271894 | 1.00[EUR][1000 genomes] |
rs12271996 | 1.00[EUR][1000 genomes] |
rs12272475 | 1.00[EUR][1000 genomes] |
rs12272819 | 1.00[EUR][1000 genomes] |
rs12274022 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs12274073 | 1.00[EUR][1000 genomes] |
rs12274363 | 1.00[EUR][1000 genomes] |
rs12275637 | 1.00[EUR][1000 genomes] |
rs12277617 | 1.00[EUR][1000 genomes] |
rs12277693 | 1.00[EUR][1000 genomes] |
rs12278475 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs12280295 | 1.00[EUR][1000 genomes] |
rs12281892 | 1.00[EUR][1000 genomes] |
rs12282060 | 1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs12283407 | 1.00[EUR][1000 genomes] |
rs12283656 | 1.00[EUR][1000 genomes] |
rs12285168 | 1.00[EUR][1000 genomes] |
rs12285189 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs12285333 | 1.00[EUR][1000 genomes] |
rs12285566 | 1.00[EUR][1000 genomes] |
rs12286997 | 1.00[EUR][1000 genomes] |
rs12289365 | 1.00[EUR][1000 genomes] |
rs12289373 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs12291219 | 1.00[EUR][1000 genomes] |
rs12292886 | 1.00[EUR][1000 genomes] |
rs12293132 | 1.00[EUR][1000 genomes] |
rs12294879 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs12295554 | 1.00[EUR][1000 genomes] |
rs17161531 | 1.00[EUR][1000 genomes] |
rs2298775 | 1.00[EUR][1000 genomes] |
rs28468070 | 1.00[EUR][1000 genomes] |
rs28481909 | 1.00[EUR][1000 genomes] |
rs28655145 | 1.00[EUR][1000 genomes] |
rs3794059 | 1.00[EUR][1000 genomes] |
rs3794061 | 1.00[EUR][1000 genomes] |
rs3814732 | 1.00[EUR][1000 genomes] |
rs56012338 | 1.00[EUR][1000 genomes] |
rs56120850 | 1.00[EUR][1000 genomes] |
rs59601821 | 1.00[EUR][1000 genomes] |
rs61440863 | 1.00[EUR][1000 genomes] |
rs6592104 | 1.00[EUR][1000 genomes] |
rs73530502 | 1.00[EUR][1000 genomes] |
rs7950991 | 1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv530623 | chr11:71088949-72020418 | Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 134 gene(s) | inside rSNPs | diseases |
2 | nsv468632 | chr11:71200320-71289089 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
3 | nsv555402 | chr11:71200320-71289089 | Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
4 | esv3372246 | chr11:71223101-71435819 | Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
5 | nsv897900 | chr11:71234107-71276909 | Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 8 gene(s) | inside rSNPs | diseases |
6 | nsv897899 | chr11:71234107-71277981 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 8 gene(s) | inside rSNPs | diseases |
7 | esv3363568 | chr11:71237277-71275754 | Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 8 gene(s) | inside rSNPs | diseases |
8 | esv3425891 | chr11:71237287-71275790 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 8 gene(s) | inside rSNPs | diseases |
9 | esv3528100 | chr11:71237332-71275725 | Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 8 gene(s) | inside rSNPs | diseases |
10 | esv3528101 | chr11:71237332-71275725 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 8 gene(s) | inside rSNPs | diseases |
11 | esv3432021 | chr11:71237346-71275760 | ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 8 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr11:71232800-71243600 | Weak transcription | Brain Angular Gyrus | brain |
2 | chr11:71232800-71245800 | Weak transcription | Pancreas | Pancrea |
3 | chr11:71232800-71259800 | Weak transcription | Brain Cingulate Gyrus | brain |
4 | chr11:71239000-71241400 | Weak transcription | Fetal Adrenal Gland | Adrenal Gland |
5 | chr11:71239000-71246400 | Weak transcription | Primary hematopoietic stem cells short term culture | blood |
6 | chr11:71239200-71239800 | Enhancers | HepG2 | liver |