Variant report

Variant	rs58882518
Chromosome Location	chr6:37732600-37732601
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37724711..37727241-chr6:37731920..37733429,2	K562	blood:
2	chr6:37709517..37710460-chr6:37731517..37732952,4	MCF-7	breast:
3	chr6:37709553..37710109-chr6:37731972..37732874,2	MCF-7	breast:
4	chr6:37725215..37727241-chr6:37731217..37733429,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs6904352	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73730813	0.82[EUR][1000 genomes]
rs912453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs942387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37728200-37732600	Enhancers	HepG2	liver
2	chr6:37729000-37734000	Enhancers	Stomach Mucosa	stomach
3	chr6:37730200-37733600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:37730800-37733200	Weak transcription	Gastric	stomach
5	chr6:37730800-37735200	Enhancers	Liver	Liver
6	chr6:37731400-37733800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:37731600-37734000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
8	chr6:37731600-37734400	Weak transcription	Fetal Brain Male	brain
9	chr6:37731600-37751000	Weak transcription	Psoas Muscle	Psoas
10	chr6:37731800-37732600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
11	chr6:37732000-37732600	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:37732000-37732600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
13	chr6:37732000-37732600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
14	chr6:37732000-37732800	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
15	chr6:37732400-37732600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
16	chr6:37732400-37732600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr6:37732400-37732600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:37732400-37732600	Enhancers	Duodenum Mucosa	Duodenum
19	chr6:37732400-37732600	Enhancers	Placenta	Placenta
20	chr6:37732400-37732800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
21	chr6:37732400-37732800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr6:37732600-37732800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr6:37732600-37732800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
24	chr6:37732600-37733400	Weak transcription	Duodenum Mucosa	Duodenum
25	chr6:37732600-37733400	Weak transcription	HepG2	liver

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