Variant report

Variant	rs942387
Chromosome Location	chr6:37730895-37730896
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs58882518	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6904352	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73730813	0.82[EUR][1000 genomes]
rs912453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37728200-37732600	Enhancers	HepG2	liver
2	chr6:37729000-37734000	Enhancers	Stomach Mucosa	stomach
3	chr6:37729400-37731000	Enhancers	Fetal Intestine Small	intestine
4	chr6:37730200-37731600	Enhancers	Fetal Brain Male	brain
5	chr6:37730200-37733600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:37730400-37731200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
7	chr6:37730600-37731200	Enhancers	Fetal Brain Female	brain
8	chr6:37730600-37732400	Weak transcription	Placenta	Placenta
9	chr6:37730800-37731600	Enhancers	Duodenum Mucosa	Duodenum
10	chr6:37730800-37733200	Weak transcription	Gastric	stomach
11	chr6:37730800-37735200	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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