Variant report

Variant	rs58890083
Chromosome Location	chr2:169605837-169605838
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:169599528..169602506-chr2:169604602..169606605,2	K562	blood:
2	chr2:169605248..169607017-chr2:169608764..169610767,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16855794	0.89[EUR][1000 genomes]
rs56372916	0.89[EUR][1000 genomes]
rs58609585	0.82[AMR][1000 genomes]
rs62175687	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915920	chr2:168851960-169696591	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:169565200-169622800	Weak transcription	Liver	Liver
2	chr2:169577600-169606400	Weak transcription	Thymus	Thymus
3	chr2:169577600-169613600	Weak transcription	Fetal Kidney	kidney
4	chr2:169579600-169606000	Weak transcription	Pancreas	Pancrea
5	chr2:169579600-169610400	Weak transcription	HepG2	liver
6	chr2:169579600-169630200	Weak transcription	Aorta	Aorta
7	chr2:169579600-169630600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr2:169580400-169610600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr2:169580800-169610600	Weak transcription	Primary B cells from cord blood	blood
10	chr2:169581000-169612000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr2:169581200-169606400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr2:169581600-169610400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr2:169583800-169613000	Weak transcription	Primary hematopoietic stem cells	blood
14	chr2:169586000-169627600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr2:169586200-169607600	Weak transcription	Fetal Stomach	stomach
16	chr2:169586600-169606400	Weak transcription	GM12878-XiMat	blood
17	chr2:169587200-169606200	Weak transcription	Right Atrium	heart
18	chr2:169587800-169623200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr2:169593400-169612400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr2:169594000-169611000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr2:169594400-169607600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr2:169595000-169608400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr2:169595000-169610600	Weak transcription	HMEC	breast
24	chr2:169595200-169621000	Weak transcription	Brain Germinal Matrix	brain
25	chr2:169595200-169622800	Weak transcription	NHEK	skin
26	chr2:169597200-169608600	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr2:169597200-169635800	Weak transcription	Ovary	ovary
28	chr2:169597600-169613600	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr2:169598600-169622800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr2:169599200-169607400	Weak transcription	Fetal Intestine Large	intestine
31	chr2:169601400-169610600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr2:169601600-169625800	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr2:169602600-169609000	Weak transcription	Lung	lung
34	chr2:169602800-169610400	Weak transcription	Duodenum Mucosa	Duodenum
35	chr2:169603200-169608200	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr2:169603800-169608000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr2:169604200-169615200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
38	chr2:169604400-169606400	Enhancers	Pancreatic Islets	Pancreatic Islet
39	chr2:169604400-169606600	Enhancers	Fetal Heart	heart
40	chr2:169604400-169607200	Enhancers	Primary T helper naive cells from peripheral blood	blood
41	chr2:169604400-169607400	Enhancers	Primary T helper cells PMA-I stimulated	--
42	chr2:169604400-169615400	Enhancers	Primary T helper cells fromperipheralblood	blood
43	chr2:169604600-169606000	Enhancers	H1 Cell Line	embryonic stem cell
44	chr2:169604600-169606200	Enhancers	Stomach Smooth Muscle	stomach
45	chr2:169604600-169606600	Enhancers	Gastric	stomach
46	chr2:169604600-169606600	Enhancers	Psoas Muscle	Psoas
47	chr2:169604600-169606800	Enhancers	Primary T cells fromperipheralblood	blood
48	chr2:169604600-169607600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
49	chr2:169604600-169609200	Enhancers	Fetal Muscle Leg	muscle
50	chr2:169604600-169615800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links