Variant report

Variant	rs56372916
Chromosome Location	chr2:169615032-169615033
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:169609648..169612063-chr2:169614401..169616642,2	K562	blood:
2	chr2:169614606..169616373-chr2:169628281..169631112,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16855794	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17198917	0.84[EUR][1000 genomes]
rs58431993	0.92[AFR][1000 genomes]
rs58890083	0.89[EUR][1000 genomes]
rs62175681	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62175683	0.84[EUR][1000 genomes]
rs62175687	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915920	chr2:168851960-169696591	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:169565200-169622800	Weak transcription	Liver	Liver
2	chr2:169579600-169630200	Weak transcription	Aorta	Aorta
3	chr2:169579600-169630600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr2:169586000-169627600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:169587800-169623200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr2:169595200-169621000	Weak transcription	Brain Germinal Matrix	brain
7	chr2:169595200-169622800	Weak transcription	NHEK	skin
8	chr2:169597200-169635800	Weak transcription	Ovary	ovary
9	chr2:169598600-169622800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr2:169601600-169625800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr2:169604200-169615200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr2:169604400-169615400	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr2:169604600-169615800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr2:169604600-169616000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr2:169604800-169627600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr2:169605600-169615800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr2:169606000-169623000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr2:169606000-169630600	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr2:169606000-169630600	Weak transcription	Adipose Nuclei	Adipose
20	chr2:169606200-169630400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr2:169606600-169630600	Weak transcription	Gastric	stomach
22	chr2:169606600-169632800	Weak transcription	Pancreas	Pancrea
23	chr2:169608000-169616000	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr2:169608000-169622000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr2:169608000-169625800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr2:169608200-169615200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr2:169608200-169615800	Enhancers	Primary T killer memory cells from peripheral blood	blood
28	chr2:169608200-169617600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr2:169608200-169618000	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr2:169608200-169619000	Weak transcription	Colon Smooth Muscle	Colon
31	chr2:169608200-169633800	Weak transcription	Psoas Muscle	Psoas
32	chr2:169608400-169615400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr2:169608400-169615800	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr2:169608400-169626800	Weak transcription	Fetal Lung	lung
35	chr2:169608400-169627600	Weak transcription	HSMM	muscle
36	chr2:169608400-169632200	Weak transcription	HSMMtube	muscle
37	chr2:169608400-169633600	Weak transcription	Dnd41	blood
38	chr2:169608600-169615400	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr2:169609000-169615400	Genic enhancers	Primary T cells from cord blood	blood
40	chr2:169609000-169628000	Weak transcription	Primary B cells from peripheral blood	blood
41	chr2:169609200-169636400	Weak transcription	Lung	lung
42	chr2:169609400-169633000	Weak transcription	Rectal Smooth Muscle	rectum
43	chr2:169609600-169634200	Weak transcription	Fetal Brain Male	brain
44	chr2:169610000-169625800	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr2:169610000-169630600	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr2:169610600-169622800	Weak transcription	Esophagus	oesophagus
47	chr2:169610800-169637400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr2:169611200-169636600	Weak transcription	HepG2	liver
49	chr2:169611600-169622800	Weak transcription	HMEC	breast
50	chr2:169611600-169625800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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