Variant report

Variant	rs62175681
Chromosome Location	chr2:169611959-169611960
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:169609648..169612063-chr2:169614401..169616642,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16855794	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17198917	1.00[EUR][1000 genomes]
rs56372916	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62175679	0.84[AMR][1000 genomes]
rs62175683	1.00[EUR][1000 genomes]
rs62175686	0.89[EUR][1000 genomes]
rs62175687	0.84[EUR][1000 genomes]
rs62175689	0.88[EUR][1000 genomes]
rs73969944	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915920	chr2:168851960-169696591	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:169565200-169622800	Weak transcription	Liver	Liver
2	chr2:169577600-169613600	Weak transcription	Fetal Kidney	kidney
3	chr2:169579600-169630200	Weak transcription	Aorta	Aorta
4	chr2:169579600-169630600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr2:169581000-169612000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr2:169583800-169613000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr2:169586000-169627600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:169587800-169623200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr2:169593400-169612400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr2:169595200-169621000	Weak transcription	Brain Germinal Matrix	brain
11	chr2:169595200-169622800	Weak transcription	NHEK	skin
12	chr2:169597200-169635800	Weak transcription	Ovary	ovary
13	chr2:169597600-169613600	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr2:169598600-169622800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr2:169601600-169625800	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr2:169604200-169615200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr2:169604400-169615400	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr2:169604600-169615800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr2:169604600-169616000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr2:169604800-169627600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr2:169605200-169612400	Weak transcription	Right Ventricle	heart
22	chr2:169605600-169615800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr2:169606000-169623000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr2:169606000-169630600	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr2:169606000-169630600	Weak transcription	Adipose Nuclei	Adipose
26	chr2:169606200-169612000	Weak transcription	Stomach Smooth Muscle	stomach
27	chr2:169606200-169630400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr2:169606600-169630600	Weak transcription	Gastric	stomach
29	chr2:169606600-169632800	Weak transcription	Pancreas	Pancrea
30	chr2:169606800-169613200	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr2:169607800-169613400	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr2:169608000-169613000	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr2:169608000-169616000	Enhancers	Primary T helper cells PMA-I stimulated	--
34	chr2:169608000-169622000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr2:169608000-169625800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr2:169608200-169612800	Weak transcription	GM12878-XiMat	blood
37	chr2:169608200-169613600	Weak transcription	Small Intestine	intestine
38	chr2:169608200-169615200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
39	chr2:169608200-169615800	Enhancers	Primary T killer memory cells from peripheral blood	blood
40	chr2:169608200-169617600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr2:169608200-169618000	Strong transcription	Monocytes-CD14+_RO01746	blood
42	chr2:169608200-169619000	Weak transcription	Colon Smooth Muscle	Colon
43	chr2:169608200-169633800	Weak transcription	Psoas Muscle	Psoas
44	chr2:169608400-169613000	Weak transcription	Thymus	Thymus
45	chr2:169608400-169615400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr2:169608400-169615800	Enhancers	Primary T helper naive cells from peripheral blood	blood
47	chr2:169608400-169626800	Weak transcription	Fetal Lung	lung
48	chr2:169608400-169627600	Weak transcription	HSMM	muscle
49	chr2:169608400-169632200	Weak transcription	HSMMtube	muscle
50	chr2:169608400-169633600	Weak transcription	Dnd41	blood

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