Variant report

Variant	rs62175686
Chromosome Location	chr2:169628107-169628108
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:169627058..169629094-chr2:169775848..169778213,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17198917	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62175681	0.89[EUR][1000 genomes]
rs62175683	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62175689	0.93[AMR][1000 genomes]
rs62175691	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915920	chr2:168851960-169696591	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:169579600-169630200	Weak transcription	Aorta	Aorta
2	chr2:169579600-169630600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:169597200-169635800	Weak transcription	Ovary	ovary
4	chr2:169606000-169630600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr2:169606000-169630600	Weak transcription	Adipose Nuclei	Adipose
6	chr2:169606200-169630400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr2:169606600-169630600	Weak transcription	Gastric	stomach
8	chr2:169606600-169632800	Weak transcription	Pancreas	Pancrea
9	chr2:169608200-169633800	Weak transcription	Psoas Muscle	Psoas
10	chr2:169608400-169632200	Weak transcription	HSMMtube	muscle
11	chr2:169608400-169633600	Weak transcription	Dnd41	blood
12	chr2:169609200-169636400	Weak transcription	Lung	lung
13	chr2:169609400-169633000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr2:169609600-169634200	Weak transcription	Fetal Brain Male	brain
15	chr2:169610000-169630600	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr2:169610800-169637400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr2:169611200-169636600	Weak transcription	HepG2	liver
18	chr2:169614400-169631800	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr2:169615800-169630600	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr2:169618000-169628200	Weak transcription	Brain Angular Gyrus	brain
21	chr2:169618000-169630400	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr2:169619600-169630400	Weak transcription	HUVEC	blood vessel
23	chr2:169620000-169628200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr2:169621400-169630400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr2:169621600-169631000	Strong transcription	Fetal Thymus	thymus
26	chr2:169622200-169641400	Weak transcription	Small Intestine	intestine
27	chr2:169622400-169629200	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr2:169622400-169631400	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr2:169623400-169630000	Weak transcription	Left Ventricle	heart
30	chr2:169623400-169630200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr2:169623400-169630200	Weak transcription	Fetal Muscle Trunk	muscle
32	chr2:169623400-169630400	Weak transcription	Thymus	Thymus
33	chr2:169623400-169630600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr2:169623400-169632600	Weak transcription	Right Ventricle	heart
35	chr2:169623400-169632800	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr2:169624200-169630600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr2:169624400-169628800	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr2:169624400-169632800	Weak transcription	NHEK	skin
39	chr2:169624600-169630400	Weak transcription	Osteobl	bone
40	chr2:169624800-169632200	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr2:169625400-169633000	Strong transcription	Primary T cells from cord blood	blood
42	chr2:169625600-169632400	Weak transcription	Fetal Intestine Small	intestine
43	chr2:169625600-169635400	Weak transcription	Fetal Stomach	stomach
44	chr2:169626200-169628800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr2:169626400-169629000	Weak transcription	Liver	Liver
46	chr2:169626400-169630000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr2:169626400-169632200	Weak transcription	GM12878-XiMat	blood
48	chr2:169626600-169630000	Weak transcription	Brain Germinal Matrix	brain
49	chr2:169626600-169630000	Enhancers	K562	blood
50	chr2:169626600-169630200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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