Variant report

Variant	rs58896161
Chromosome Location	chr3:158181381-158181382
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:158177518..158180211-chr3:158180565..158183137,2	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs16828961	0.85[ASN][1000 genomes]
rs16828966	0.85[ASN][1000 genomes]
rs16828986	0.85[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs16828988	0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs16828994	0.85[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs16828996	0.85[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs16828998	0.85[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs16829044	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1978780	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2196357	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55879756	0.85[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs56254920	0.85[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs56290300	0.85[ASN][1000 genomes]
rs58251618	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58277254	0.83[ASN][1000 genomes]
rs58352503	0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs59024285	0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs59966175	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs60175462	0.82[ASN][1000 genomes]
rs60589185	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61297176	0.85[ASN][1000 genomes]
rs62287862	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62287863	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62287866	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62287867	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62287869	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62287870	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62287871	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62287872	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62287885	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62289511	0.82[ASN][1000 genomes]
rs62289512	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62289513	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62289515	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62289516	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6802223	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6805361	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73874391	0.81[ASN][1000 genomes]
rs73874397	0.85[ASN][1000 genomes]
rs73874400	0.85[ASN][1000 genomes]
rs73877203	0.85[ASN][1000 genomes]
rs73877204	0.85[ASN][1000 genomes]
rs73877205	0.85[ASN][1000 genomes]
rs73877206	0.81[ASN][1000 genomes]
rs73877207	0.85[ASN][1000 genomes]
rs73877209	0.85[ASN][1000 genomes]
rs73877211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73877215	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002378	chr3:157715428-158673414	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv916910	chr3:157926799-158183372	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1014381	chr3:158070451-158350118	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1004124	chr3:158146715-158808638	Genic enhancers Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	nsv1013046	chr3:158176582-158244606	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1014557	chr3:158176582-158251602	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:158169600-158182400	Weak transcription	Primary B cells from cord blood	blood

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