Variant report

Variant	rs73877209
Chromosome Location	chr3:158150615-158150616
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10513524	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10513525	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1520659	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16828767	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16828770	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16828774	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16828775	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16828778	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16828800	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16828808	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16828809	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16828841	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16828850	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16828887	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16828961	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16828966	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16828986	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16828988	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16828994	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16828996	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16828998	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2362248	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4411841	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4536777	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4552311	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4635665	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55746917	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55879756	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56002119	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56024662	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56058155	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56106526	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56138932	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56254920	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56286928	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56290300	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57386317	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57611848	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58277254	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58352503	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58896161	0.85[ASN][1000 genomes]
rs59024285	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59192297	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59344326	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59535842	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59903748	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59966175	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60175462	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60187224	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60364048	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60467343	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60531369	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60928655	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61297176	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73874335	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73874336	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73874338	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73874345	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73874346	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73874347	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73874348	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73874350	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73874351	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73874356	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73874357	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73874371	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73874373	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73874377	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73874378	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73874380	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73874385	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73874387	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73874391	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73874397	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73874400	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73875326	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73877203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73877204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73877205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73877206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73877207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73877211	0.87[ASN][1000 genomes]
rs7434006	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002378	chr3:157715428-158673414	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv916910	chr3:157926799-158183372	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1014381	chr3:158070451-158350118	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1000904	chr3:158094357-158159317	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1004124	chr3:158146715-158808638	Genic enhancers Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	nsv967206	chr3:158149860-158176292	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:158145600-158164600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:158149000-158150800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:158150600-158150800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:158150600-158151000	Weak transcription	A549	lung

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