Variant report

Variant	rs59344326
Chromosome Location	chr3:158059897-158059898
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10513524	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10513525	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11388130	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1520659	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16828720	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16828727	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16828737	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16828740	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16828741	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16828746	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16828759	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16828767	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16828770	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16828774	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16828775	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16828778	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16828800	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16828808	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16828809	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16828841	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16828850	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16828887	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16828961	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16828966	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16828986	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16828988	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16828994	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16828996	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16828998	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2362248	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4411841	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4536777	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4552311	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4635665	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55746917	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55879756	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56002119	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56024662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56058155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56106526	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56138932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56254920	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56286928	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56290300	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57386317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57611848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58277254	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58352503	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59024285	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59192297	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59535842	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59903748	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59966175	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60175462	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60187224	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60364048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60467343	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60531369	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60928655	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61297176	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73874307	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73874313	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73874314	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73874316	0.85[EUR][1000 genomes]
rs73874317	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73874320	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73874321	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73874322	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73874324	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73874327	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73874329	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73874331	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73874333	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73874334	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73874335	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73874336	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73874338	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73874345	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73874346	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73874347	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73874348	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73874350	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73874351	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73874356	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73874357	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73874371	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73874373	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73874377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73874378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73874380	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73874385	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73874387	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73874391	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73874397	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73874400	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73875326	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73877203	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73877204	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73877205	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73877206	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73877207	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73877209	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7434006	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013391	chr3:157505943-158115553	Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv536775	chr3:157505943-158115553	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1002378	chr3:157715428-158673414	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv877689	chr3:157858930-158133307	Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv916910	chr3:157926799-158183372	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:158047800-158064800	Weak transcription	Ovary	ovary
2	chr3:158047800-158077800	Weak transcription	Gastric	stomach
3	chr3:158048200-158079400	Weak transcription	Right Ventricle	heart
4	chr3:158055000-158077200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:158055200-158086000	Weak transcription	Left Ventricle	heart
6	chr3:158057800-158079600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:158059000-158060000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
8	chr3:158059800-158060000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell

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