Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RUNX3	chr1:215174545-215175539	GM12878	blood:	n/a	n/a
2	CEBPB	chr1:215174522-215175516	GM12878	blood:	n/a	n/a
3	NFIC	chr1:215174557-215175531	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
KCNK2	TF binding region

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11120457	1.00[ASN][1000 genomes]
rs1156732	1.00[ASN][1000 genomes]
rs12064317	1.00[ASN][1000 genomes]
rs12066755	1.00[ASN][1000 genomes]
rs12073570	1.00[ASN][1000 genomes]
rs12097900	1.00[ASN][1000 genomes]
rs12119060	1.00[ASN][1000 genomes]
rs1377174	1.00[ASN][1000 genomes]
rs1377176	1.00[ASN][1000 genomes]
rs1452611	1.00[ASN][1000 genomes]
rs1452613	1.00[ASN][1000 genomes]
rs1452614	1.00[ASN][1000 genomes]
rs1452615	1.00[ASN][1000 genomes]
rs1452616	1.00[ASN][1000 genomes]
rs1452617	1.00[ASN][1000 genomes]
rs1452618	1.00[ASN][1000 genomes]
rs1452619	1.00[ASN][1000 genomes]
rs1452621	1.00[ASN][1000 genomes]
rs1452622	1.00[ASN][1000 genomes]
rs1562993	1.00[ASN][1000 genomes]
rs1562994	1.00[ASN][1000 genomes]
rs1597846	1.00[ASN][1000 genomes]
rs1901622	1.00[ASN][1000 genomes]
rs2167687	1.00[ASN][1000 genomes]
rs2601626	1.00[ASN][1000 genomes]
rs2601627	1.00[ASN][1000 genomes]
rs2601628	1.00[ASN][1000 genomes]
rs2601629	1.00[ASN][1000 genomes]
rs2601632	1.00[ASN][1000 genomes]
rs2802646	1.00[ASN][1000 genomes]
rs2802652	1.00[ASN][1000 genomes]
rs2802653	1.00[ASN][1000 genomes]
rs2802655	1.00[ASN][1000 genomes]
rs2841576	1.00[ASN][1000 genomes]
rs2841578	1.00[ASN][1000 genomes]
rs2841582	1.00[ASN][1000 genomes]
rs2841584	1.00[ASN][1000 genomes]
rs2841585	1.00[ASN][1000 genomes]
rs2841586	1.00[ASN][1000 genomes]
rs2841589	1.00[ASN][1000 genomes]
rs2841590	1.00[ASN][1000 genomes]
rs28753797	1.00[ASN][1000 genomes]
rs72731088	1.00[ASN][1000 genomes]
rs7519026	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468105	chr1:215167236-215248417	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv549182	chr1:215167236-215248417	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215164200-215174800	Weak transcription	NH-A	brain
2	chr1:215164800-215175000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr1:215167400-215174600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:215168000-215174800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:215172800-215174600	Weak transcription	Osteobl	bone
6	chr1:215174000-215174800	Enhancers	GM12878-XiMat	blood
7	chr1:215174400-215175200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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