Variant report

Variant	rs58903771
Chromosome Location	chr8:126438027-126438028
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr8:126437896-126438425	PFSK-1	brain:	n/a	n/a
2	GATA2	chr8:126438009-126438610	HUVEC	blood vessel:	n/a	n/a
3	RAD21	chr8:126437865-126440046	HCT-116	colon:	n/a	n/a
4	FOS	chr8:126438024-126438438	MCF10A-Er-Src	breast:	n/a	chr8:126438198-126438209
5	REST	chr8:126437953-126438408	PFSK-1	brain:	n/a	n/a
6	FOS	chr8:126438024-126438476	MCF10A-Er-Src	breast:	n/a	chr8:126438198-126438209
7	POLR2A	chr8:126437941-126438509	HUVEC	blood vessel:	n/a	n/a
8	POLR2A	chr8:126438009-126438522	HCT-116	colon:	n/a	n/a
9	TCF7L2	chr8:126438024-126438526	Hela-S3	cervix:	n/a	n/a
10	POLR2A	chr8:126438009-126438336	HUVEC	blood vessel:	n/a	n/a
11	FOS	chr8:126437993-126438384	HUVEC	blood vessel:	n/a	chr8:126438198-126438209
12	POLR2A	chr8:126437981-126438480	HCT-116	colon:	n/a	n/a
13	TCF7L2	chr8:126438025-126438429	HCT-116	colon:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr8:126364442..126366316-chr8:126435893..126438793,2	K562	blood:
2	chr8:126412429..126413958-chr8:126437402..126438965,2	MCF-7	breast:
3	chr8:126435775..126439025-chr8:126439650..126442842,6	K562	blood:
4	chr8:126425069..126427223-chr8:126437128..126439624,2	K562	blood:
5	chr8:126423668..126425842-chr8:126436681..126438719,2	MCF-7	breast:

Variant related genes	Relation type
TRIB1	TF binding region
ENSG00000173334	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11787371	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2385110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3201475	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4421363	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4871592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs58903771	TRIB1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126423400-126441200	Weak transcription	Right Atrium	heart
2	chr8:126426000-126439200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:126428600-126438200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:126429000-126438600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr8:126429000-126439200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr8:126429400-126439000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr8:126429600-126438800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr8:126430000-126438400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr8:126430200-126438400	Weak transcription	Adipose Nuclei	Adipose
10	chr8:126430400-126441000	Weak transcription	Brain Cingulate Gyrus	brain
11	chr8:126430600-126438200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr8:126430600-126438200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr8:126431600-126438200	Weak transcription	Colonic Mucosa	Colon
14	chr8:126432000-126439400	Weak transcription	Fetal Stomach	stomach
15	chr8:126433000-126441200	Weak transcription	HMEC	breast
16	chr8:126433600-126439400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr8:126434000-126440200	Weak transcription	Spleen	Spleen
18	chr8:126435200-126438400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr8:126435200-126438600	Enhancers	Hela-S3	cervix
20	chr8:126435400-126441200	Weak transcription	GM12878-XiMat	blood
21	chr8:126435600-126439000	Weak transcription	Fetal Thymus	thymus
22	chr8:126435600-126439600	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr8:126436000-126441200	Weak transcription	Primary B cells from cord blood	blood
24	chr8:126436200-126438800	Enhancers	Liver	Liver
25	chr8:126436200-126441000	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr8:126436400-126441200	Weak transcription	Primary B cells from peripheral blood	blood
27	chr8:126436800-126438200	Weak transcription	Pancreas	Pancrea
28	chr8:126436800-126440800	Weak transcription	K562	blood
29	chr8:126436800-126441400	Weak transcription	Ovary	ovary
30	chr8:126437400-126439600	Enhancers	HUVEC	blood vessel
31	chr8:126438000-126438400	Enhancers	Lung	lung
32	chr8:126438000-126438600	Enhancers	HepG2	liver
33	chr8:126438000-126438800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr8:126438000-126439200	Enhancers	A549	lung
35	chr8:126438000-126439800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr8:126438000-126439800	Enhancers	Duodenum Mucosa	Duodenum
37	chr8:126438000-126440200	Enhancers	NHEK	skin

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