Variant report

Variant	rs2385110
Chromosome Location	chr8:126439329-126439330
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:33)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:33 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr8:126439130-126440044	ECC-1	luminal epithelium:	n/a	n/a
2	TCF12	chr8:126439285-126439955	ECC-1	luminal epithelium:	n/a	chr8:126439778-126439785
3	POLR2A	chr8:126439328-126439420	A549	lung:	n/a	n/a
4	ZKSCAN1	chr8:126439137-126439337	Hela-S3	cervix:	n/a	n/a
5	TCF7L2	chr8:126439314-126440037	Hela-S3	cervix:	n/a	chr8:126439671-126439678
6	MXI1	chr8:126439101-126439757	HepG2	liver:	n/a	n/a
7	MAX	chr8:126439270-126439470	HepG2	liver:	n/a	n/a
8	ZNF143	chr8:126439313-126439652	H1-hESC	embryonic stem cell:	n/a	n/a
9	HEY1	chr8:126439191-126439805	HepG2	liver:	n/a	n/a
10	RAD21	chr8:126437865-126440046	HCT-116	colon:	n/a	n/a
11	TBP	chr8:126439277-126439534	HepG2	liver:	n/a	n/a
12	HEY1	chr8:126439251-126439522	HepG2	liver:	n/a	n/a
13	RAD21	chr8:126439303-126439645	H1-hESC	embryonic stem cell:	n/a	n/a
14	YY1	chr8:126439154-126439613	ECC-1	luminal epithelium:	n/a	n/a
15	SMC3	chr8:126438692-126439333	HepG2	liver:	n/a	n/a
16	EP300	chr8:126438988-126439489	HepG2	liver:	n/a	n/a
17	MBD4	chr8:126438528-126439394	HepG2	liver:	n/a	n/a
18	POLR2A	chr8:126439246-126439678	HepG2	liver:	n/a	n/a
19	POLR2A	chr8:126439191-126439821	HCT-116	colon:	n/a	n/a
20	MAX	chr8:126439184-126439893	ECC-1	luminal epithelium:	n/a	n/a
21	TCF12	chr8:126438969-126439728	A549	lung:	n/a	n/a
22	SMC3	chr8:126439296-126439720	Hela-S3	cervix:	n/a	n/a
23	RCOR1	chr8:126438979-126439473	HepG2	liver:	n/a	n/a
24	POLR2A	chr8:126438949-126439657	HepG2	liver:	n/a	n/a
25	POLR2A	chr8:126439175-126439699	HepG2	liver:	n/a	n/a
26	POLR2A	chr8:126439295-126439470	HepG2	liver:	n/a	n/a
27	POLR2A	chr8:126439250-126439437	H1-hESC	embryonic stem cell:	n/a	n/a
28	POLR2A	chr8:126439213-126439923	HCT-116	colon:	n/a	n/a
29	NFIC	chr8:126439139-126439867	ECC-1	luminal epithelium:	n/a	n/a
30	POLR2A	chr8:126439006-126439755	HepG2	liver:	n/a	n/a
31	ZNF263	chr8:126438582-126439871	HEK293-T-REx	kidney:	n/a	n/a
32	YY1	chr8:126439286-126439616	HCT-116	colon:	n/a	n/a
33	POLR2A	chr8:126439316-126439615	HepG2	liver:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:126242871..126243528-chr8:126438843..126439606,2	MCF-7	breast:
2	chr8:126191655..126193648-chr8:126438129..126439880,2	MCF-7	breast:
3	chr8:126425069..126427223-chr8:126437128..126439624,2	K562	blood:
4	chr8:126130720..126131864-chr8:126438477..126439411,5	MCF-7	breast:

No data

Variant related genes	Relation type
TRIB1	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11787371	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3201475	1.00[ASW][hapmap];0.96[CEU][hapmap];0.98[GIH][hapmap];0.95[MEX][hapmap];0.96[MKK][hapmap];0.97[TSI][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4421363	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4871592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4871593	0.93[GIH][hapmap]
rs58903771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2385110	TRIB1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126423400-126441200	Weak transcription	Right Atrium	heart
2	chr8:126430400-126441000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr8:126432000-126439400	Weak transcription	Fetal Stomach	stomach
4	chr8:126433000-126441200	Weak transcription	HMEC	breast
5	chr8:126433600-126439400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr8:126434000-126440200	Weak transcription	Spleen	Spleen
7	chr8:126435400-126441200	Weak transcription	GM12878-XiMat	blood
8	chr8:126435600-126439600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr8:126436000-126441200	Weak transcription	Primary B cells from cord blood	blood
10	chr8:126436200-126441000	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr8:126436400-126441200	Weak transcription	Primary B cells from peripheral blood	blood
12	chr8:126436800-126440800	Weak transcription	K562	blood
13	chr8:126436800-126441400	Weak transcription	Ovary	ovary
14	chr8:126437400-126439600	Enhancers	HUVEC	blood vessel
15	chr8:126438000-126439800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr8:126438000-126439800	Enhancers	Duodenum Mucosa	Duodenum
17	chr8:126438000-126440200	Enhancers	NHEK	skin
18	chr8:126438200-126439800	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr8:126438200-126440400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr8:126438200-126440400	Enhancers	Pancreas	Pancrea
21	chr8:126438200-126440600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr8:126438200-126441000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr8:126438200-126441000	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr8:126438200-126441200	Enhancers	Colonic Mucosa	Colon
25	chr8:126438200-126441200	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr8:126438400-126439600	Enhancers	Adipose Nuclei	Adipose
27	chr8:126438400-126439800	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr8:126438400-126439800	Enhancers	H9 Cell Line	embryonic stem cell
29	chr8:126438400-126439800	Enhancers	Gastric	stomach
30	chr8:126438400-126439800	Enhancers	Rectal Mucosa Donor 29	rectum
31	chr8:126438400-126440400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr8:126438400-126441200	Weak transcription	Lung	lung
33	chr8:126438600-126439800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr8:126438600-126439800	Enhancers	Brain Anterior Caudate	brain
35	chr8:126438600-126439800	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr8:126438600-126440000	Enhancers	Fetal Muscle Leg	muscle
37	chr8:126438600-126440400	Flanking Active TSS	HepG2	liver
38	chr8:126438600-126440600	Enhancers	H1 Cell Line	embryonic stem cell
39	chr8:126438600-126441200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr8:126438600-126441200	Weak transcription	Left Ventricle	heart
41	chr8:126438800-126439400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
42	chr8:126438800-126439600	Enhancers	Fetal Intestine Small	intestine
43	chr8:126438800-126441200	Enhancers	Cortex derived primary cultured neurospheres	brain
44	chr8:126438800-126441200	Enhancers	Hela-S3	cervix
45	chr8:126438800-126441400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
46	chr8:126438800-126441400	Weak transcription	Liver	Liver
47	chr8:126439000-126439400	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr8:126439000-126439600	Enhancers	Fetal Intestine Large	intestine
49	chr8:126439000-126439800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr8:126439000-126439800	Enhancers	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links