Variant report

Variant	rs58918138
Chromosome Location	chr4:20353473-20353474
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10026931	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10027333	0.82[EUR][1000 genomes]
rs4552454	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7435615	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv593792	chr4:20275477-20362716	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20343400-20355400	Weak transcription	Fetal Lung	lung
2	chr4:20348600-20354400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:20350600-20358400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:20353000-20353600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr4:20353000-20353600	Enhancers	Colon Smooth Muscle	Colon
6	chr4:20353000-20353800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr4:20353000-20354000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr4:20353000-20354200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:20353200-20353600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr4:20353200-20353600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr4:20353200-20353600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr4:20353200-20353600	Enhancers	Brain Angular Gyrus	brain
13	chr4:20353200-20353600	Enhancers	Brain Anterior Caudate	brain
14	chr4:20353200-20353600	Enhancers	Brain Cingulate Gyrus	brain
15	chr4:20353200-20353600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr4:20353200-20353600	Enhancers	Fetal Brain Male	brain
17	chr4:20353200-20353600	Enhancers	NHDF-Ad	bronchial
18	chr4:20353200-20353800	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr4:20353200-20353800	Enhancers	Brain Substantia Nigra	brain
20	chr4:20353200-20354000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr4:20353400-20353800	Enhancers	Brain Hippocampus Middle	brain
22	chr4:20353400-20353800	Enhancers	Fetal Kidney	kidney
23	chr4:20353400-20358400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr4:20353400-20369200	Weak transcription	Pancreas	Pancrea

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