Variant report

Variant	rs7435615
Chromosome Location	chr4:20399168-20399169
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10026931	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10027333	0.82[EUR][1000 genomes]
rs11733205	0.86[YRI][hapmap]
rs1995982	0.86[YRI][hapmap]
rs4403045	1.00[YRI][hapmap]
rs4552454	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58918138	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1842873	chr4:20361842-20399168	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20393200-20405800	Weak transcription	Fetal Lung	lung
2	chr4:20393200-20408800	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:20395600-20404800	Weak transcription	NHDF-Ad	bronchial
4	chr4:20395600-20405000	Weak transcription	Brain Anterior Caudate	brain
5	chr4:20397000-20399800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr4:20398800-20399200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr4:20398800-20399400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr4:20399000-20399200	Enhancers	H1 Cell Line	embryonic stem cell
9	chr4:20399000-20399200	Enhancers	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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