Variant report

Variant	rs11733205
Chromosome Location	chr4:20458688-20458689
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10008461	0.82[YRI][hapmap];0.92[AFR][1000 genomes]
rs10026931	1.00[YRI][hapmap]
rs1995982	0.90[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs4403045	0.89[ASW][hapmap];0.90[LWK][hapmap];0.91[MKK][hapmap];0.86[YRI][hapmap]
rs4552454	0.86[YRI][hapmap]
rs6447961	1.00[ASW][hapmap];0.90[LWK][hapmap];0.94[MKK][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes]
rs6849536	1.00[ASW][hapmap];0.90[LWK][hapmap];0.91[MKK][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes]
rs7435615	0.86[YRI][hapmap]
rs7696707	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878741	chr4:20440476-20486230	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20449600-20486000	Weak transcription	Fetal Lung	lung
2	chr4:20457600-20459000	Enhancers	NHDF-Ad	bronchial
3	chr4:20457800-20458800	Enhancers	HUVEC	blood vessel
4	chr4:20458400-20462800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:20458600-20464000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr4:20458600-20464000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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