Variant report

Variant	rs10008461
Chromosome Location	chr4:20440323-20440324
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10015975	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10026931	0.82[YRI][hapmap]
rs11733205	0.82[YRI][hapmap];0.92[AFR][1000 genomes]
rs12331455	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13134750	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs13138510	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1995982	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35328376	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35443168	0.87[ASN][1000 genomes]
rs35642460	0.86[ASN][1000 genomes]
rs35861139	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35915704	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35964528	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35987086	0.85[ASN][1000 genomes]
rs4403045	0.91[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4406013	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs56041945	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59943579	0.82[ASN][1000 genomes]
rs61789394	0.82[ASN][1000 genomes]
rs6447961	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6849536	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7696707	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20434800-20446000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:20435000-20444200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:20435400-20444200	Weak transcription	Fetal Lung	lung
4	chr4:20438200-20442000	Weak transcription	Colon Smooth Muscle	Colon
5	chr4:20438200-20444400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr4:20440200-20440800	Enhancers	NHEK	skin

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