Variant report

Variant	rs61789394
Chromosome Location	chr4:20372669-20372670
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10008461	0.82[ASN][1000 genomes]
rs10015975	0.80[ASN][1000 genomes]
rs12331455	0.89[ASN][1000 genomes]
rs13134750	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13138510	0.83[ASN][1000 genomes]
rs35328376	0.83[ASN][1000 genomes]
rs35443168	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35642460	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35861139	0.85[ASN][1000 genomes]
rs35987086	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4403045	0.89[ASN][1000 genomes]
rs4406013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6447961	0.82[ASN][1000 genomes]
rs6849536	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1842873	chr4:20361842-20399168	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20353800-20375600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:20364000-20375400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:20366000-20375600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr4:20369800-20375600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:20371000-20375600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:20371000-20375800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr4:20371200-20375400	Weak transcription	Osteobl	bone
8	chr4:20371400-20375400	Weak transcription	Aorta	Aorta
9	chr4:20371400-20375400	Weak transcription	Brain Hippocampus Middle	brain
10	chr4:20371600-20372800	Enhancers	Fetal Lung	lung
11	chr4:20371600-20375400	Weak transcription	Brain Substantia Nigra	brain
12	chr4:20372200-20375400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr4:20372200-20375400	Weak transcription	NHDF-Ad	bronchial
14	chr4:20372400-20375200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:20372400-20377800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr4:20372600-20375200	Weak transcription	NHLF	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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