Variant report

Variant	rs35642460
Chromosome Location	chr4:20391705-20391706
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10008461	0.86[ASN][1000 genomes]
rs10015975	0.85[ASN][1000 genomes]
rs12331455	0.84[ASN][1000 genomes]
rs13134750	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1995982	0.84[ASN][1000 genomes]
rs35443168	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35861139	0.81[ASN][1000 genomes]
rs35987086	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4403045	0.84[ASN][1000 genomes]
rs4406013	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61789394	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6447961	0.86[ASN][1000 genomes]
rs6849536	0.86[ASN][1000 genomes]
rs7696707	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1842873	chr4:20361842-20399168	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20380200-20392600	Weak transcription	NHDF-Ad	bronchial
2	chr4:20387800-20392600	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:20387800-20392800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr4:20388000-20392800	Weak transcription	Fetal Lung	lung
5	chr4:20388600-20393000	Weak transcription	NHLF	lung
6	chr4:20388800-20396200	Weak transcription	Brain Angular Gyrus	brain
7	chr4:20391600-20392600	Weak transcription	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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