Variant report

Variant	rs4406013
Chromosome Location	chr4:20362716-20362717
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10008461	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs12331455	0.85[ASN][1000 genomes]
rs13134750	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13138510	0.87[ASN][1000 genomes]
rs1995982	0.82[CHB][hapmap];0.86[CHD][hapmap];0.83[JPT][hapmap]
rs35328376	0.87[ASN][1000 genomes]
rs35443168	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35642460	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35861139	0.89[ASN][1000 genomes]
rs35964528	0.83[ASN][1000 genomes]
rs35987086	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4403045	0.91[CHB][hapmap];0.89[CHD][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs56041945	0.83[ASN][1000 genomes]
rs61789394	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6447961	0.84[CHD][hapmap];0.86[JPT][hapmap]
rs6849536	0.82[CHB][hapmap];0.86[CHD][hapmap];0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv593792	chr4:20275477-20362716	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv1842873	chr4:20361842-20399168	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20353400-20369200	Weak transcription	Pancreas	Pancrea
2	chr4:20353600-20369200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:20353800-20375600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:20356200-20363800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr4:20357000-20368400	Weak transcription	NHDF-Ad	bronchial
6	chr4:20357000-20369000	Weak transcription	Osteobl	bone
7	chr4:20358400-20368200	Weak transcription	NHLF	lung
8	chr4:20358600-20366800	Weak transcription	Fetal Lung	lung
9	chr4:20358600-20371000	Weak transcription	Brain Anterior Caudate	brain
10	chr4:20358800-20365400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr4:20359000-20363600	Weak transcription	Brain Angular Gyrus	brain
12	chr4:20359000-20363600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr4:20359400-20363600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:20359800-20365000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr4:20360000-20368200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr4:20361000-20368600	Weak transcription	NHEK	skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links