Variant report

Variant	rs6447961
Chromosome Location	chr4:20432425-20432426
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10008461	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10015975	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10026931	0.92[YRI][hapmap]
rs11733205	1.00[ASW][hapmap];0.90[LWK][hapmap];0.94[MKK][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes]
rs12331455	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13134750	0.86[JPT][hapmap]
rs13138510	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1995982	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35328376	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35443168	0.87[ASN][1000 genomes]
rs35642460	0.86[ASN][1000 genomes]
rs35861139	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35915704	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35964528	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35987086	0.85[ASN][1000 genomes]
rs4403045	0.89[ASW][hapmap];0.91[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.89[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4406013	0.84[CHD][hapmap];0.86[JPT][hapmap]
rs56041945	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59943579	0.82[ASN][1000 genomes]
rs61789394	0.82[ASN][1000 genomes]
rs6849536	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7696707	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20420800-20433400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr4:20421000-20433600	Weak transcription	Aorta	Aorta
3	chr4:20421400-20433400	Weak transcription	Brain Anterior Caudate	brain
4	chr4:20430200-20434200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:20430600-20433400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr4:20430600-20433400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr4:20430800-20433000	Weak transcription	Fetal Lung	lung
8	chr4:20431200-20432800	Enhancers	NHDF-Ad	bronchial
9	chr4:20431200-20435400	Enhancers	Fetal Intestine Small	intestine
10	chr4:20431600-20433000	Enhancers	Colon Smooth Muscle	Colon
11	chr4:20431600-20433000	Weak transcription	Fetal Muscle Leg	muscle
12	chr4:20431800-20432600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr4:20431800-20432600	Enhancers	NHEK	skin
14	chr4:20431800-20432800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr4:20431800-20432800	Enhancers	NHLF	lung
16	chr4:20431800-20433000	Enhancers	Rectal Smooth Muscle	rectum
17	chr4:20431800-20433200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr4:20431800-20433200	Enhancers	Muscle Satellite Cultured Cells	--
19	chr4:20431800-20433600	Enhancers	Osteobl	bone
20	chr4:20431800-20434800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr4:20432200-20432800	Enhancers	HMEC	breast
22	chr4:20432200-20433400	Enhancers	Placenta Amnion	Placenta Amnion
23	chr4:20432400-20432600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr4:20432400-20432600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr4:20432400-20432600	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr4:20432400-20432600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr4:20432400-20432600	Enhancers	Fetal Stomach	stomach
28	chr4:20432400-20432600	Enhancers	Small Intestine	intestine
29	chr4:20432400-20432600	Enhancers	Hela-S3	cervix
30	chr4:20432400-20432600	Enhancers	HUVEC	blood vessel
31	chr4:20432400-20432800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr4:20432400-20433000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr4:20432400-20436000	Enhancers	Fetal Intestine Large	intestine

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