Variant report

Variant	rs7696707
Chromosome Location	chr4:20450095-20450096
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10008461	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10015975	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11733205	0.92[AFR][1000 genomes]
rs12331455	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13138510	0.80[ASN][1000 genomes]
rs1995982	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35328376	0.80[ASN][1000 genomes]
rs35443168	0.81[ASN][1000 genomes]
rs35642460	0.81[ASN][1000 genomes]
rs35861139	0.82[ASN][1000 genomes]
rs4403045	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6447961	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6849536	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878741	chr4:20440476-20486230	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv527095	chr4:20447040-20455955	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20447800-20454000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:20447800-20457800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:20448000-20454000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:20448000-20456600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:20448800-20457600	Weak transcription	NHDF-Ad	bronchial
6	chr4:20449400-20453200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:20449600-20486000	Weak transcription	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links