Variant report

Variant	rs1995982
Chromosome Location	chr4:20424774-20424775
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:20423426..20426001-chr4:20546337..20549229,2	MCF-7	breast:
2	chr4:20423666..20425699-chr4:20545912..20547306,15	MCF-7	breast:
3	chr4:20424367..20425209-chr4:20686856..20687583,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10008461	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10015975	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10026931	1.00[YRI][hapmap]
rs11733205	0.90[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs12331455	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13134750	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs13138510	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35328376	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35443168	0.84[ASN][1000 genomes]
rs35642460	0.84[ASN][1000 genomes]
rs35861139	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35915704	0.82[EUR][1000 genomes]
rs35964528	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35987086	0.83[ASN][1000 genomes]
rs4403045	0.91[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4406013	0.82[CHB][hapmap];0.86[CHD][hapmap];0.83[JPT][hapmap]
rs4552454	0.86[YRI][hapmap]
rs56041945	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6447961	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6849536	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7435615	0.86[YRI][hapmap]
rs7696707	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20420800-20424800	Enhancers	NHDF-Ad	bronchial
2	chr4:20420800-20427600	Weak transcription	Brain Hippocampus Middle	brain
3	chr4:20420800-20433400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr4:20421000-20433600	Weak transcription	Aorta	Aorta
5	chr4:20421200-20425000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:20421200-20430400	Weak transcription	NHLF	lung
7	chr4:20421200-20431800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr4:20421400-20424800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr4:20421400-20433400	Weak transcription	Brain Anterior Caudate	brain
10	chr4:20422400-20429600	Weak transcription	Brain Substantia Nigra	brain
11	chr4:20423200-20426400	Enhancers	Colon Smooth Muscle	Colon
12	chr4:20423600-20428600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr4:20423600-20431800	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr4:20424000-20427600	Weak transcription	Fetal Lung	lung
15	chr4:20424200-20424800	Enhancers	Osteobl	bone

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