Variant report

Variant	rs59943579
Chromosome Location	chr4:20325468-20325469
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10008461	0.82[ASN][1000 genomes]
rs10015975	0.81[ASN][1000 genomes]
rs12331455	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13134750	0.81[ASN][1000 genomes]
rs13138510	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35328376	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35861139	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35915704	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35964528	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4403045	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56041945	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6447961	0.82[ASN][1000 genomes]
rs6849536	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv593792	chr4:20275477-20362716	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv593793	chr4:20282334-20333722	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv878740	chr4:20292239-20333722	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20306200-20325600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr4:20315600-20325600	Weak transcription	Lung	lung
3	chr4:20315600-20328000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:20319600-20327600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr4:20320200-20334000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:20320600-20327400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr4:20320800-20326600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr4:20321600-20327400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:20321800-20327800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr4:20322000-20327600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr4:20322400-20325600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr4:20322400-20325800	Weak transcription	NHDF-Ad	bronchial
13	chr4:20322400-20328000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr4:20322400-20328000	Weak transcription	NHLF	lung
15	chr4:20323200-20334800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr4:20323400-20334800	Weak transcription	Brain Hippocampus Middle	brain
17	chr4:20323600-20328200	Weak transcription	Fetal Lung	lung
18	chr4:20323600-20334000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr4:20323800-20335000	Weak transcription	Brain Substantia Nigra	brain
20	chr4:20324000-20327600	Weak transcription	Brain Anterior Caudate	brain
21	chr4:20324600-20326200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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