Variant report

Variant	rs58932701
Chromosome Location	chr19:36661768-36661769
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:36654605..36656507-chr19:36659169..36663563,3	K562	blood:
2	chr19:36618311..36619273-chr19:36661263..36662378,12	K562	blood:
3	chr19:36617317..36620455-chr19:36659858..36661867,3	MCF-7	breast:
4	chr19:36630037..36631640-chr19:36661058..36663609,2	MCF-7	breast:
5	chr19:36618283..36619274-chr19:36661381..36662319,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126247	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs55637545	1.00[AMR][1000 genomes]
rs57139776	1.00[AMR][1000 genomes]
rs58080082	1.00[AMR][1000 genomes]
rs73931508	1.00[AMR][1000 genomes]
rs73931515	1.00[AMR][1000 genomes]
rs73931517	1.00[AMR][1000 genomes]
rs73931518	1.00[AMR][1000 genomes]
rs73931520	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3526489	chr19:36306483-36741945	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
2	esv3526490	chr19:36306483-36741945	Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
3	esv1831737	chr19:36324324-36690874	Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
4	esv2752541	chr19:36563057-36690874	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
5	nsv579425	chr19:36643695-36685753	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36642200-36673400	Weak transcription	Primary B cells from cord blood	blood
2	chr19:36643000-36673800	Weak transcription	NH-A	brain
3	chr19:36643800-36673200	Weak transcription	Brain Germinal Matrix	brain
4	chr19:36644400-36673000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr19:36644400-36673200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr19:36644400-36673400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr19:36644400-36673400	Weak transcription	Brain Angular Gyrus	brain
8	chr19:36652400-36673400	Weak transcription	Fetal Brain Female	brain
9	chr19:36653000-36661800	Weak transcription	GM12878-XiMat	blood
10	chr19:36653000-36673400	Weak transcription	Primary T cells from cord blood	blood
11	chr19:36653200-36662800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr19:36653200-36673200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr19:36653200-36673200	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr19:36653200-36673400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr19:36653200-36673400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr19:36653200-36673400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr19:36653200-36673400	Weak transcription	HMEC	breast
18	chr19:36653200-36673600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr19:36653200-36681400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr19:36653200-36684600	Weak transcription	Aorta	Aorta
21	chr19:36655000-36673600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr19:36655800-36673400	Weak transcription	Fetal Brain Male	brain
23	chr19:36657800-36673400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr19:36658000-36673600	Weak transcription	Fetal Stomach	stomach
25	chr19:36659800-36661800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr19:36659800-36661800	Enhancers	Fetal Intestine Large	intestine
27	chr19:36659800-36661800	Enhancers	Fetal Intestine Small	intestine
28	chr19:36659800-36661800	Enhancers	Fetal Muscle Leg	muscle
29	chr19:36659800-36661800	Enhancers	Left Ventricle	heart
30	chr19:36659800-36661800	Enhancers	HUVEC	blood vessel
31	chr19:36660000-36661800	Enhancers	Muscle Satellite Cultured Cells	--
32	chr19:36660000-36661800	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr19:36660000-36661800	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr19:36660000-36673400	Weak transcription	Lung	lung
35	chr19:36660400-36673400	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr19:36660400-36673400	Weak transcription	HSMMtube	muscle
37	chr19:36660400-36673600	Weak transcription	Pancreas	Pancrea
38	chr19:36660600-36661800	Enhancers	Rectal Mucosa Donor 29	rectum
39	chr19:36660600-36663200	Weak transcription	Right Atrium	heart
40	chr19:36660600-36673400	Weak transcription	Thymus	Thymus
41	chr19:36660800-36661800	Enhancers	Rectal Mucosa Donor 31	rectum
42	chr19:36660800-36673200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr19:36660800-36673200	Weak transcription	HSMM	muscle
44	chr19:36660800-36673400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr19:36660800-36673400	Weak transcription	Brain Substantia Nigra	brain
46	chr19:36660800-36673400	Weak transcription	Esophagus	oesophagus
47	chr19:36660800-36673600	Weak transcription	Right Ventricle	heart
48	chr19:36660800-36673600	Weak transcription	Spleen	Spleen
49	chr19:36661000-36661800	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr19:36661200-36661800	Enhancers	Colonic Mucosa	Colon

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