Variant report

Variant	rs58935762
Chromosome Location	chr19:35896022-35896023
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CBX3	chr19:35895999-35896376	K562	blood:	n/a	n/a
2	YY1	chr19:35896017-35896570	GM12878	blood:	n/a	chr19:35896240-35896256 chr19:35896228-35896237
3	MAX	chr19:35895997-35896689	GM12878	blood:	n/a	n/a
4	IRF4	chr19:35895900-35896669	GM12878	blood:	n/a	n/a
5	MTA3	chr19:35895817-35896609	GM12878	blood:	n/a	n/a
6	RUNX3	chr19:35895948-35896707	GM12878	blood:	n/a	n/a
7	IKZF1	chr19:35896000-35896711	GM12878	blood:	n/a	n/a
8	STAT3	chr19:35895956-35896585	GM12878	blood:	n/a	n/a
9	CREB1	chr19:35895985-35896768	GM12878	blood:	n/a	n/a
10	POLR2A	chr19:35895985-35896555	GM12892	blood:	n/a	n/a
11	POLR2A	chr19:35895943-35896489	GM12878	blood:	n/a	n/a
12	BATF	chr19:35895947-35896669	GM12878	blood:	n/a	chr19:35896254-35896264 chr19:35896458-35896467
13	ATF2	chr19:35895890-35896658	GM12878	blood:	n/a	n/a
14	FOSL2	chr19:35895996-35896545	SK-N-SH	brain:	n/a	chr19:35896253-35896261 chr19:35896251-35896263 chr19:35896229-35896238
15	BCLAF1	chr19:35896011-35896657	GM12878	blood:	n/a	chr19:35896227-35896236
16	FOXM1	chr19:35895915-35896784	GM12878	blood:	n/a	n/a
17	STAT5A	chr19:35895851-35896570	GM12878	blood:	n/a	n/a
18	CEBPB	chr19:35895988-35896734	GM12878	blood:	n/a	n/a
19	RCOR1	chr19:35895967-35896645	GM12878	blood:	n/a	n/a
20	BCLAF1	chr19:35895842-35896591	GM12878	blood:	n/a	chr19:35896227-35896236
21	POU2F2	chr19:35895953-35896678	GM12878	blood:	n/a	n/a
22	BCL11A	chr19:35895993-35896575	GM12878	blood:	n/a	chr19:35896227-35896236
23	POU2F2	chr19:35896014-35896591	GM12891	blood:	n/a	n/a
24	MXI1	chr19:35895832-35896552	IMR90	lung:	n/a	n/a
25	POLR2A	chr19:35895910-35896541	GM12878	blood:	n/a	n/a
26	MTA3	chr19:35895759-35896737	GM12878	blood:	n/a	n/a
27	FOXM1	chr19:35895867-35896747	GM12878	blood:	n/a	n/a
28	WRNIP1	chr19:35895905-35896655	GM12878	blood:	n/a	n/a
29	PAX5	chr19:35895861-35896727	GM12878	blood:	n/a	n/a
30	RUNX3	chr19:35895850-35896726	GM12878	blood:	n/a	n/a
31	SMC3	chr19:35896009-35896612	GM12878	blood:	n/a	n/a
32	JUN	chr19:35895769-35896731	K562	blood:	n/a	chr19:35896253-35896261 chr19:35896251-35896263 chr19:35896229-35896238
33	NFIC	chr19:35895934-35896686	GM12878	blood:	n/a	n/a
34	MAZ	chr19:35895940-35896522	IMR90	lung:	n/a	n/a
35	BHLHE40	chr19:35896014-35896570	GM12878	blood:	n/a	n/a
36	PML	chr19:35895769-35896698	GM12878	blood:	n/a	n/a
37	CREB1	chr19:35895928-35896769	GM12878	blood:	n/a	n/a
38	POLR2A	chr19:35896006-35896536	GM12891	blood:	n/a	n/a
39	IRF4	chr19:35895992-35896618	GM12878	blood:	n/a	n/a
40	NFATC1	chr19:35895987-35896637	GM12878	blood:	n/a	n/a
41	CHD2	chr19:35896020-35896637	GM12878	blood:	n/a	chr19:35896473-35896480
42	ATF2	chr19:35895907-35896698	GM12878	blood:	n/a	n/a
43	NFIC	chr19:35895642-35896811	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000205786	TF binding region

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs57104528	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60890836	1.00[AMR][1000 genomes]
rs73595434	1.00[AMR][1000 genomes]
rs73595439	1.00[AMR][1000 genomes]
rs73601118	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv1060100	chr19:35658505-36170042	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv543993	chr19:35658505-36170042	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
4	nsv833810	chr19:35782588-35971959	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
5	nsv2471	chr19:35837405-35903115	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv833811	chr19:35850257-36029535	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
7	nsv911626	chr19:35856925-35896467	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv911627	chr19:35856925-35921266	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:35886800-35899200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr19:35894200-35896200	Enhancers	HepG2	liver
3	chr19:35894600-35896400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr19:35894600-35896400	Weak transcription	Adipose Nuclei	Adipose
5	chr19:35894600-35896800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr19:35894600-35900200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr19:35894800-35896200	Weak transcription	K562	blood
8	chr19:35894800-35901000	Weak transcription	Right Ventricle	heart
9	chr19:35895200-35897400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr19:35895600-35897000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr19:35895800-35896600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr19:35895800-35896600	Enhancers	Placenta Amnion	Placenta Amnion
13	chr19:35895800-35896800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr19:35895800-35896800	Enhancers	HMEC	breast
15	chr19:35895800-35896800	Enhancers	NHEK	skin
16	chr19:35895800-35897000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr19:35895800-35897000	Enhancers	NHDF-Ad	bronchial
18	chr19:35895800-35897000	Enhancers	Osteobl	bone
19	chr19:35896000-35896200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr19:35896000-35896200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr19:35896000-35896200	Flanking Active TSS	GM12878-XiMat	blood
22	chr19:35896000-35896400	Enhancers	Brain Cingulate Gyrus	brain
23	chr19:35896000-35896400	Active TSS	Spleen	Spleen
24	chr19:35896000-35896600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr19:35896000-35896600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr19:35896000-35896800	Enhancers	Placenta	Placenta
27	chr19:35896000-35897000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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