Variant report

Variant	rs58937666
Chromosome Location	chr4:160606436-160606437
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17038629	1.00[AFR][1000 genomes]
rs60541977	1.00[AFR][1000 genomes]
rs73858911	1.00[AFR][1000 genomes]
rs73858915	1.00[AFR][1000 genomes]
rs73858917	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv881205	chr4:160516090-160628006	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv2755953	chr4:160557413-160626250	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv595813	chr4:160574450-160665365	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160604200-160606800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:160605200-160606800	Enhancers	HMEC	breast
3	chr4:160605400-160606800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:160605400-160606800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr4:160605400-160607600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:160606200-160607200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr4:160606200-160607400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr4:160606200-160607600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr4:160606200-160608400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:160606400-160606800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr4:160606400-160607000	Enhancers	H9 Cell Line	embryonic stem cell
12	chr4:160606400-160607000	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chr4:160606400-160607000	Enhancers	Fetal Muscle Leg	muscle
14	chr4:160606400-160607000	Enhancers	Pancreas	Pancrea
15	chr4:160606400-160607000	Enhancers	Rectal Smooth Muscle	rectum
16	chr4:160606400-160607000	Enhancers	HSMMtube	muscle
17	chr4:160606400-160607400	Enhancers	Brain Substantia Nigra	brain
18	chr4:160606400-160607600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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