Variant report

Variant	rs60541977
Chromosome Location	chr4:160607729-160607730
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:160606063..160608102-chr4:160627902..160629687,2	MCF-7	breast:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10021956	1.00[EUR][1000 genomes]
rs10029579	1.00[EUR][1000 genomes]
rs10031028	1.00[EUR][1000 genomes]
rs13434862	1.00[EUR][1000 genomes]
rs1379602	1.00[EUR][1000 genomes]
rs1457816	1.00[EUR][1000 genomes]
rs17038406	1.00[EUR][1000 genomes]
rs17038435	1.00[EUR][1000 genomes]
rs17038443	1.00[EUR][1000 genomes]
rs17038479	1.00[EUR][1000 genomes]
rs17038490	1.00[EUR][1000 genomes]
rs17038523	1.00[EUR][1000 genomes]
rs17038579	1.00[EUR][1000 genomes]
rs17038629	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28416067	1.00[EUR][1000 genomes]
rs28537283	1.00[EUR][1000 genomes]
rs28808952	1.00[EUR][1000 genomes]
rs28857244	1.00[EUR][1000 genomes]
rs28870485	1.00[EUR][1000 genomes]
rs4234929	1.00[EUR][1000 genomes]
rs4361339	1.00[EUR][1000 genomes]
rs55747993	1.00[EUR][1000 genomes]
rs55911637	1.00[EUR][1000 genomes]
rs56372042	1.00[EUR][1000 genomes]
rs56693065	1.00[EUR][1000 genomes]
rs57095996	1.00[EUR][1000 genomes]
rs57486354	1.00[EUR][1000 genomes]
rs58088795	1.00[EUR][1000 genomes]
rs58103883	1.00[EUR][1000 genomes]
rs58937666	1.00[AFR][1000 genomes]
rs59592744	1.00[EUR][1000 genomes]
rs59766829	1.00[EUR][1000 genomes]
rs60224043	1.00[EUR][1000 genomes]
rs6827726	1.00[EUR][1000 genomes]
rs72972893	1.00[EUR][1000 genomes]
rs72974928	1.00[EUR][1000 genomes]
rs72974934	1.00[EUR][1000 genomes]
rs72974935	1.00[EUR][1000 genomes]
rs72974937	1.00[EUR][1000 genomes]
rs72974939	1.00[EUR][1000 genomes]
rs72974941	1.00[EUR][1000 genomes]
rs72976753	1.00[EUR][1000 genomes]
rs72976755	1.00[EUR][1000 genomes]
rs72976757	1.00[EUR][1000 genomes]
rs72976758	1.00[EUR][1000 genomes]
rs72976762	1.00[EUR][1000 genomes]
rs72976765	1.00[EUR][1000 genomes]
rs72976771	1.00[EUR][1000 genomes]
rs73858908	1.00[EUR][1000 genomes]
rs73858910	1.00[EUR][1000 genomes]
rs73858911	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73858915	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73858917	1.00[AFR][1000 genomes]
rs73858937	1.00[EUR][1000 genomes]
rs73858938	1.00[EUR][1000 genomes]
rs73858947	1.00[EUR][1000 genomes]
rs73858952	1.00[EUR][1000 genomes]
rs73862114	1.00[EUR][1000 genomes]
rs73862124	1.00[EUR][1000 genomes]
rs7442223	1.00[EUR][1000 genomes]
rs7670295	1.00[EUR][1000 genomes]
rs7688493	1.00[EUR][1000 genomes]
rs7688559	1.00[EUR][1000 genomes]
rs7688666	1.00[EUR][1000 genomes]
rs7688749	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv881205	chr4:160516090-160628006	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv2755953	chr4:160557413-160626250	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv595813	chr4:160574450-160665365	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160606200-160608400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:160606800-160607800	Enhancers	Colon Smooth Muscle	Colon
3	chr4:160606800-160608000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr4:160606800-160613000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:160607200-160609000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:160607400-160607800	Enhancers	Rectal Smooth Muscle	rectum
7	chr4:160607600-160608000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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