Variant report

Variant	rs72972893
Chromosome Location	chr4:160701036-160701037
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:160700406-160701807	SK-N-MC	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000250488	TF binding region

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10021956	1.00[EUR][1000 genomes]
rs10029579	1.00[EUR][1000 genomes]
rs10031028	1.00[EUR][1000 genomes]
rs10428306	1.00[AMR][1000 genomes]
rs10428387	1.00[AMR][1000 genomes]
rs13434862	1.00[EUR][1000 genomes]
rs1379602	1.00[EUR][1000 genomes]
rs1457816	1.00[EUR][1000 genomes]
rs17038490	1.00[EUR][1000 genomes]
rs17038523	1.00[EUR][1000 genomes]
rs17038579	1.00[EUR][1000 genomes]
rs17038629	1.00[EUR][1000 genomes]
rs17038867	1.00[AMR][1000 genomes]
rs2198987	1.00[AMR][1000 genomes]
rs2198988	1.00[AMR][1000 genomes]
rs2219400	1.00[AMR][1000 genomes]
rs28372545	1.00[AMR][1000 genomes]
rs28416067	1.00[EUR][1000 genomes]
rs28537283	1.00[EUR][1000 genomes]
rs28677878	1.00[AMR][1000 genomes]
rs28808952	1.00[EUR][1000 genomes]
rs28857244	1.00[EUR][1000 genomes]
rs28870485	1.00[EUR][1000 genomes]
rs4234929	1.00[EUR][1000 genomes]
rs55747993	1.00[EUR][1000 genomes]
rs55911637	1.00[EUR][1000 genomes]
rs56372042	1.00[EUR][1000 genomes]
rs56693065	1.00[EUR][1000 genomes]
rs57095996	1.00[EUR][1000 genomes]
rs57486354	1.00[EUR][1000 genomes]
rs58088795	1.00[EUR][1000 genomes]
rs59592744	1.00[EUR][1000 genomes]
rs59766829	1.00[EUR][1000 genomes]
rs60224043	1.00[EUR][1000 genomes]
rs60541977	1.00[EUR][1000 genomes]
rs6814758	1.00[ASN][1000 genomes]
rs6827726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72971158	1.00[AMR][1000 genomes]
rs72971183	1.00[AMR][1000 genomes]
rs72972820	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72972884	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72974928	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72974934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72974935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72974937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72974939	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72974941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72976753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72976755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72976757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72976758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72976762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72976765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72976768	0.86[AFR][1000 genomes]
rs72976771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72978803	1.00[AMR][1000 genomes]
rs72978804	1.00[AMR][1000 genomes]
rs72978806	1.00[AMR][1000 genomes]
rs72978807	1.00[AMR][1000 genomes]
rs72982033	1.00[AMR][1000 genomes]
rs73858908	1.00[EUR][1000 genomes]
rs73858910	1.00[EUR][1000 genomes]
rs73858911	1.00[EUR][1000 genomes]
rs73858915	1.00[EUR][1000 genomes]
rs73858937	1.00[EUR][1000 genomes]
rs73858938	1.00[EUR][1000 genomes]
rs73858947	1.00[EUR][1000 genomes]
rs73858952	1.00[EUR][1000 genomes]
rs73862114	1.00[EUR][1000 genomes]
rs73862124	1.00[EUR][1000 genomes]
rs7442223	1.00[EUR][1000 genomes]
rs7667123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7670295	1.00[EUR][1000 genomes]
rs7688493	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7688559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7688666	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7688749	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9307995	1.00[ASN][1000 genomes]
rs9684747	1.00[ASN][1000 genomes]
rs9685442	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv880358	chr4:160694415-161575183	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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